SimpleSearch - Line and FST details


Line specific information

 
Line ID 101G09
Vector Used pAC161
Line Availability available as T3 set from NASC (N409681)
Segregation Analysis 50:46:43
Confirmed for Hit At3g13790
Parent of DUPLO pair none
Parent of pair(s) 1347, 4250, 4294, 9944, 91278

Gene hit F11I2

 
Sequence (A. th genome BLAST matches underlined) 
>71-012072-strizhov-G9-8409
NTGATCCATGTAGATTTCCCTGACATGAAGCACTTTACAACTTGAATATACTCCTGACAC
GGCTCTATGTACATCGCTACATCTGACACGATCCCGTTACTGAAGCGAGTTAGTCTAACC
ACTGTTATCAGTCAGCGAAAGCCACCTTTAAACACCATCCGATTTATCGTTTAAAAATAT
AGGTGACGAATATAAGATGCTAACTGATCACTCTTTATATGGAGCCTGTACTCGTCAATA
CCAAATAAGCTATGGGATCCTCCCTATAGTGAGTCGTATTACTCAANTTGGGGCCTCCCT
TTTTTACCCGTTAAAATAAGTGGAACAAATATTTTATTATTCTTATTCAAAAATTTAACT
AATCTGGATGGGATCCCTGTTTAATGGAATAATCTAATTTAATATAAAAAAAAAATTCTA
TGGGATCCTCCCTATAGGGAGTCGTTTTAC
GenBank Accession AL755745 [GenBank]
Graphic View Graphic view of sequence AL755745 of line 101G09
Predicted Position of Insertion Chr3:12456050 - go to primer design
BLAST e Value 1e-41
Hit Clone Code (BAC ID) F11I2
Insertion Classification Genome Hit
Confirmation Status unknown
Other FSTs Supporting this Hit FR803004 [GenBank] CU589386 [GenBank] CU589386 [GenBank]

Gene hit At3g13790

 
Sequence (A. th genome BLAST matches underlined) 
>71-K012120-022-101-G9-35St
ATACTGACGTAAGGGATGACGCATANTCCACTATCCTTCGCAAGACCCTTCCTCTTATAA
GGAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCC
TTCGGTTTAAACTATCAGTGTTTGCGACCTGTGGAGCTCGCATGCTTTCAACTACCCTAA
CCGGACACCTGAATTAATTGTTTCCCTGATCTATANCTCCATATTGTGCTTGTAATCGTC
TAATCAAGAAACAAACAAACAATTGATTCGATCTCTAACAATCATATTCACATTATTAGT
TTCATGTAAGCGTAACTAATTACCTGAATACCGGACCAACCTTTCTCAACATCATCCTCA
ACCGACGATGACTCGTTAATCCAACCCCACAAGATTCTCCGCCTCTTATCACAGTCACAA
AACGTTTTAGACGCGTAATACTTTCCGTAATCTTATCTCGGGAGCCGTACCGTCCATCTT
GAAACCATTGTCCGGTACGAATATATCTTTAACCCGATCGTACGTACCAATCGTGTAATA
ATCATGTTTCCTGTCTTCCCAACTTATTTTCAACACGTGCTTCAAAATCTCATTAGGTTC
ACCAAACGAAATACCTTTCCACGCCTGTTAGAACCAAACCTTCTGACCGGGAAAAAAATC
AGGACATTTCCCCCTTCCACTTTCCGTCGGCGTAATCCAACCGCTCTTAAAATTTTTTCC
ATTTTAAAAAGTCTTTACTTGTGTAAGTAATGGCT
GenBank Accession AL755746 [GenBank]
Graphic View Graphic view of gene At3g13790
Predicted Position of Insertion Chr3:4534197 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) MMM17
Hit Gene Code At3g13790 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Glycosyl hydrolases family 32 protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37