SimpleSearch - Line and FST details


Line specific information

 
Line ID 102E08
Vector Used pAC161
Line Availability available as T3 set from NASC (N409752)
Segregation Analysis 50:50:47
Confirmed for Hit At1g16020
Parent of DUPLO pair none
Parent of pair(s) 12124

Gene hit F1B16

 
Sequence (A. th genome BLAST matches underlined) 
>61-K012501-022-102-E08-35St
GACACACTGACGTAAGGGACGACTCACACTCCCCTACTCCCTCGCAAGACCCCTCCTCAC
TATAAGGAAGTTACCTTACCTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTC
CCGCCTTCGGTTTAAACTATCAGTGTTTGATTTACTATGGATGTGATTGGATTCACGTCT
TTCACTATACTCTGCACAAATTTGGCAGTTATATTTTTGACCCTGTGAAATAATAGAAGA
GACGACACTTACCATTTTACATACATGATTTACCCTATACACATTAACACCATATAGACT
CATCGATTAAGCTTTGCGTGGAAGTAACTTTCTACATTTTTCTATGGGATCCTCCCTATG
TGAGTCTNNTNNCCCCGAAAANCCTTATTTTCGACGTGTCTACATACACGTCCAAATGGG
GGCTTAGATGAGATACTCCACGATCGATGCCTTGATTTCGCCATTCCCAGATACCCATTT
CATCTTCAGATTGGACTGAGATTATGCGACAATATACACTCATATCATAAATACTGACAG
TTTGAGCTACCAATTCAGTGGAGCCCATTACCTTACATAATTCACTCAAATGCTA
GenBank Accession AL755815 [GenBank]
Graphic View Graphic view of sequence AL755815 of line 102E08
Predicted Position of Insertion Chr1:28325532 - go to primer design
BLAST e Value 5e-65
Hit Clone Code (BAC ID) F1B16
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At1g16020

 
Sequence (A. th genome BLAST matches underlined) 
>61-K012380-022-102-E08-8409
TTCTCACCGCCCTTTCCTCTTGAAATGTTCTCTTCAATTTTAAATTCCTCAGTGATGCCT
GGAAAAGATATATTGGGTATATTTTATACCACACCTTAATAGATATTCATCGAACATGAT
CGATGGGAGATGTGCTATCATCTTCAATAACTTGCTGTTTCACGGCTGAGATGCTTAAAT
CTCCATTGACAATGGCCTTTGTACGCATCATAAGAAGTAAGGCGAGACTTTTATGCTGAT
AGGCAAGGAGATACATTCTTTCTTGTGTCTGCTGAAGCCACTTTGCAGGGATGGCAGAAT
CAGGGGAGCCGCCAGTCTCAAGACCCCAAATATGGGTTATTATAAACCCATCTTTCCCTT
TTGTCCACTTATCATTTTGTAGTGGCCTAATAACATGATGCATGTTATTACCGTTTCTTG
AGTGTAGGGAATCAATTGAGCCAACGGGTGCCAAATACATCTATGGGATCCTCCCTA
GenBank Accession AL755814 [GenBank]
Graphic View Graphic view of gene At1g16020
Predicted Position of Insertion Chr1:5500507 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) T24D18
Hit Gene Code At1g16020 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation vacuolar fusion protein (DUF1712)
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37