SimpleSearch - Line and FST details
Line specific information
| Line ID | 104E01 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N409937) |
| Segregation Analysis | 60:40:26 |
| Confirmed for Hit | At5g63650 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 92573, 92581, 92587, 92593, 92598, 92602, 92606, 92607, 92608 |
Gene hit At5g63650
| Sequence (A. th genome BLAST matches underlined) | >05-K012136-022-104-E1-8409 TTGATCCATTGTAGATTTCCCGGACATGAAGCACTTTACAATTGAAATATTTGCTGTTCG ACGAGCTTATCACATATGTACTGTCCAGCTGTCTTCACTTTAGCATTATACTCGATATAT TTGATTTCCTTGCGACTATGTGACCATGGGATATTTTTGGAGAATCTCAAAGAATGCATC TGACGACATCGAATGCCGTCATGTGGCTATGATGATGATGAGGAAGATGTGGAAGACGAA GACGAATAATAGGACTAGTGGATTAGGAATAGGGGGAAGAAGAACAGCAGGAATACGAAG ATTATTATAAGCATGAAAATGATGCCCTTATTCGCCTTGAGCCTACCCAAGCTTAATATT CCCTCACTGCTGTTGAGCAGACTTAATATCTCCGCTGATCGTTCATATATTGGCATTACA AGATTTCAATATATGAGCTACTTTACTGACCAAATGGTCATTATACCTTTAGATCATTCC GCTTCTGTACTCCTCCATGAACAGAAGCACATTCCTCTGTNAATAACATAGCTCAGGTTT GAACATAGTGAAAGGAAGTACCTTTTACTCGTATACATAATCAGATCTCATCGTGCTTCA TTCTAAATTCACAACACTATGGGGATCCTCCCTATAGTGAGTCGTTTTACTC |
| GenBank Accession | AL756009 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:25481930 - go to primer design |
| BLAST e Value | 7e-49 |
| Hit Clone Code (BAC ID) | MBK5 |
| Hit Gene Code | At5g63650 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | SNF1-related protein kinase 2.5 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL756009 [GenBank] |
Gene hit At1g79030
| Sequence (A. th genome BLAST matches underlined) | >05-K018336-022-104-E01-8409 CCGGACTGAACCATTTACATTAAAAAATTGCTGTTCGACAAGTTTATACAATTATTACTG TTCAATTCTTCATTTGGCATTATATGATATATCGATTTAGTTGTGACTTTTGAGCATGTG TTTTTTTTTCTGATTCTAAAGTTGTTTTGGAAAAGATTGTTTGTTTTCATTTGACATTAT ATAGTTAAGCATGTTCTGTTATCTGTATACAAATCATCGTGCTTGTGGTTTTGGGATTAT GTGAAGTAATACAGCAAAGATGCGTAATTTATTTTAAGTATCAAAATTATTCTCTTATCC ACATTGTATATAGTCAAAATATATATTACAGACTGAATTAAACAGACTTAATAATAGGCA AAATGTACATATATTTGCATTAGAAGATTTCAATATATGTGTTTTTTTTCTTTCAAAAAG GTCATTTGACTCATAAGTTATAACAGCTATGGGATCTCCCCCTTTAGGGGAAGAANNTNN NNNNTNTNTNTTTTTTTTTCTTTNNNAAAACTAAATTTTCTCTTACCCATCAAATTTAAA NACCAAATTCCTCTTTTTCTCAAANAAAAAAAAAATTTATTTTTTACTGGATTTCGGGGA AACCAGCCCAACANAAAAANNGGGAGCTGGGATTGGATTTTTAAGATATTGCCCATTTCC CCTTTTTTTCGGTGGGGTGAGGTAATAAAATGTTAAATATTATTTCCCCTTTTTTCCG |
| GenBank Accession | BX001155 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:29734634 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | YUP8H12R |
| Hit Gene Code | At1g79030 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Chaperone DnaJ-domain superfamily protein |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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