SimpleSearch - Line and FST details
Line specific information
| Line ID | 104E05 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N409941) |
| Segregation Analysis | 100:91:72 |
| Confirmed for Hit | At1g09410 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 2690, 95050 |
Gene hit At1g09410
| Sequence (A. th genome BLAST matches underlined) | >10-K035347-022-104-E05C-3144 CAGACCCTTCCTCTATATAGGAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGAT CAGATTGTCGTTTCCCGTGGAATTCAATCATATCTGGTTATGCCTCACACGGTCTTGGAG AGGAAGCATTAAAGGTTTTCTGTGAGATGCCTTTGTCTGGTAGTACTAAGCCTAACGAAG TCACCTTCGTTGCAACTCTCTCAGCATGTAGTTACGCTGGGATGGTTGAGGAAGGGCTTA AGATCTATGAATCTATGGAATCAGTTTTTGGGGTTAAGCCAATCACCGCGCATTATGCTT GCATGGTAGATATGCTTGGGCGTGCAGGACGGTTTAATGAGGCAATGGAAATGATTGATA GTATGACTGTCGAACCAGATGCTGCAGTTTGGGGTTCTCTATTAGGAGCGTGCAGAACTC ACTCGCAGCTGGATGTGGCAGAATTTTGTGCGAAGAAACTCATAGAGATTGACCCCGGAG A |
| GenBank Accession | HG968735 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:3036639 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F14J9 |
| Hit Gene Code | At1g09410 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | pentatricopeptide (PPR) repeat-containing protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | HG968735 [GenBank] |
Gene hit T5C2
| Sequence (A. th genome BLAST matches underlined) | >37-K018339-022-104-E05-8409 TGATCTGAAATTTCCCGGACTGAAGCCTTTCACATTGAATATATCCTGTAAATACCGCAT CAGGCGCCATTCGCCATTCAGGCTGCGCAACTGTTGGGAAGGGCGATCGGTGCGGGCCTC TTCGCTATTACGCCAGCTGGCGAAAGGGGGATGTGCTGCAAGGCGATTAAGTTGGGTAAC GCCAGGGTTTTCCCAGTCACGACGTTGTAAAACGACGGCCAGTGCCAAGCTTGCATGTCG ACATGCATGCATGTCGACGTGCATGCATGTCGACTCTAGGATGCTCATAATTAGATGCCA CTGGTTTAAGAGACAGTTCGTTTTATGATGACTGCGCCTTGGAAAAGTCCAGTGCTTAAT TGAGATGGGATTATGGAATTGCCATTAGGACTGAATCTGATTATTCTTTGGGTAGATGGG ATCTGATCTTTGTAACCATAGCTTGAGACGGACCTTTACCATTCTACTAGAGCTTAATCA TTTTTTTTGAGAGATCCCTGTTCACTAACGCCCATGCTTAAAGGGACCATTTTTGTCTCT TGACCCTTTGCCCTGAGACAAATGAGTTTAACATGCATTGTGTAGTATGATCCATGACTC TCGCTTAAAAAATGTCAAAGGGATCCCCCCNNTTTGGAAGGGTTGGAATACACGAAGGTG AAAGATTAGGTTTGTGTTGTGAAGAAAATGGGTAACGTTTTTAGGTAGAGGTCATTCAGC CTA |
| GenBank Accession | FR803069 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:15301017 - go to primer design |
| BLAST e Value | 9e-39 |
| Hit Clone Code (BAC ID) | T5C2 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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