SimpleSearch - Line and FST details
Line specific information
| Line ID | 104H06 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N409978) |
| Segregation Analysis | 50:45:39 |
| Confirmed for Hit | At5g41550 At5g01370 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 10113, 10117, 10133, 30537, 78504, 78506, 78507, 78515, 78516, 78518, 78521, 78523, 78525, 78527, 78528, 78529 |
Gene hit At5g41550
| Sequence (A. th genome BLAST matches underlined) | >48-K012183-022-104-H06-35St TTGCGTAAGGGATGACGCACAATCCCCTATCCTTCGCAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTGA AAGCTCCGGCAGGCGCCAGGTGTCCGGATGGATTACCTGTACTATCTGTGACTGAGACTG TGCTGTGATTGCAATACCAAGGAGACATATACACTCGTTTTCAGATTGAAGCAGGAGAAC TCCTCATCTTGCTTATTATAGCAGGTCATCAGGATAAAACTGCGAGTACGGTCGGGTAGA TTTATGAGCGAATGCTCTCTCGAATGATGCTCATTCGGAAGCCTTTATTTACACGAGCCT ACGTTGACGAGCCGGTGGGGGCATTATATGAGATGCTTCTCGAGCGATGCCTTGATTTCT CCATTCCTACATCCCATTTCATTTCTACATTGGTCTGAGATTATGCGAAAATATACACTC ATATACATAAATACTGACAGTTTGAGCTACCAATTCAGTGTAGCCCATTACCTTACATAA TTCACTCAAATGCTATGGGATCCTCCCTATAGTGAGCCTTTTTCCCTTAANCCTTCNNGT TGGTGGAAGTGGTTTACCAAGCCTGGCCTGAGAAACAAGAAGATGGATCCCCCCAGAGCG AATTCTCGTGGAATCTCATGAAACCACGCCCGTTCTA |
| GenBank Accession | FR803083 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:16617757 - go to primer design |
| BLAST e Value | 3e-11 |
| Hit Clone Code (BAC ID) | MBK23 |
| Hit Gene Code | At5g41550 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Disease resistance protein (TIR-NBS-LRR class) family |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g01370
| Sequence (A. th genome BLAST matches underlined) | >48-K012136-022-104-H6-8409 TTGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACAATTGAATATATCCTGATACA ACCCTCTAACTCGCGGGCACACTTGTCCTCTCCCTCCGACTGAACTCACTTTATTTATAA GACATGGTCTTGATAAGGACTTAGCAAGACCGAGCGATCCCTCCCTAAGACCGGCTGCTC TCACTGGCGGCAGTCCGTCGGATTATATGCTCTGGTCGCCAACATACTCACCCTTGCTAC ACATGGTGGAGTCTGACGAAACACTCCAACTGCTAATCTCTTACGAAGAAAACGAAGAGC CAAAGAAAGAGATCAGAACCGAAACCGAGACCCAAAACGATGACGTCTCTCTTCACCCTT CACCACCTCCTTCTCCTGCCAACGTTGTAGCCAAACTCATGGGGCTATGGGATCCTCCCT ATAGGAGCGTTTTACCCTTAAGNCTTCTGAGACTGTATCTTTGATATTTTTGGAGTAGAC AAGCGTGTCGTGCTCCACCATGTTGACGAAGATTTTCTTCTTGTCATTGAGTCGTAAGAG ACTCTGTATGAACTGTTCGCCAGTCTTTACGGCGAGTTCTGTTAGGTCCTCTATTTGAAT CTTTGACTCCATGGGAATTGGGGGATCCTCTATGGGATCCTCCCTATAATGAGTCGATTA C |
| GenBank Accession | FR803082 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:152488 - go to primer design |
| BLAST e Value | 6e-77 |
| Hit Clone Code (BAC ID) | T10O8 |
| Hit Gene Code | At5g01370 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | ALC-interacting protein 1 |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | FR803082 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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