SimpleSearch - Line and FST details
Line specific information
| Line ID | 105F08 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N410052) |
| Segregation Analysis | 50:20:18 |
| Confirmed for Hit | At1g11060 |
| Parent of DUPLO pair | 12854 |
| Parent of pair(s) | none |
| Note | |
Gene hit At4g00390
| Sequence (A. th genome BLAST matches underlined) | >62-K018338-022-105-F08-8409 TTGATGTAAGCTAGATAGCTTGTTGCTCTGTTGGATAAGAGTGTGCGCTTGACTGACCTA ACTGCTTACTTCCTTGATGCTTCGATGAACTAAAACTGCCCATTCAGTGTAACCCAGTCT CCATATGGACCATCGAGCTACGTGTAAAAAGCAGCTAATCCTCCATTTGCTATGGATGCT CCCATGAGGAGAATTAACACAGTGAAGAATGTAAACCTTGAGGCAATCGGAGCCTATCCC ATAACAGAAAGCGGAACGGGGGAGAGAGTTTCGCTTGTCCGACCCTCGCGAAGCCGAGGA ATCCGAGGAAGGCGAGTCTCGCGGGTCGAGAACGTAACGACAACAGTTGTGCCCACATAA TCAACGGCAGAAAAGAAAGAGGACAGGGAGCAGAGCGGCCGTAACAAGGGACAAAAAAGA GCGCCAGAACAAAGAAAAGCCAACGACAAGAAATAACCCGAACCAACCCACCAAAAACAC CCCGCGAACCCAAAAGAACCTCCCGATATCCACCCCACACCCCCCCCCTACCGTAAGAGC AATATTAACAGATACAAATTAGCATAAAGGACAGTAACAACACAAAAGAAGATGACTGAA TAAGATCGGAACAAAGGCCAAACAATTNAATAAGCACGAGTATCCACAAAAGACAAACAA GCATGACAAAGGAATCT |
| GenBank Accession | BX001267 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:171828 - go to primer design |
| BLAST e Value | 5e-16 |
| Hit Clone Code (BAC ID) | F5I10 |
| Hit Gene Code | At4g00390 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | DNA-binding storekeeper protein-related transcriptional regulator |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
Gene hit At1g11060
| Sequence (A. th genome BLAST matches underlined) | >62-K018337-022-105-F08-8409 TGATCTGTAAATTTCCCGGACATGAAGCCATTTACATTGAATATATCCTGAAAAGAAAGC AGCAAATGCGATTGGCCGTTAGTTTTACAATTATCATTAAATTTTGTTGTTACCACAGTA ATAACTAATACTAAGTGAGTAACCAGAATGTTTTAAATTACTAACTAACTTTAGCAATTA AAAGTTAAAAAGAGCACACAAATTTTCACAGTCTGATTTTTGGGGTTTCAAGTTGTGTCT GAATTACAACTAAACATTTATTTGTTATTGATTTTTTTTTTTGAGAATTACCAATGCTGG AAAGTTTTAAATTTATGCTATG |
| GenBank Accession | BX001266 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:3684612 - go to primer design |
| BLAST e Value | 3e-125 |
| Hit Clone Code (BAC ID) | T19D16 |
| Hit Gene Code | At1g11060 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | WAPL (Wings apart-like protein regulation of heterochromatin) protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At3g57470
| Sequence (A. th genome BLAST matches underlined) | >62-K012182-022-105-F08-35St CCACTGTGCTTCGAAGACCCTTCCTGTATATAAGGAAGTTCATTTCATTTGGAGAGGACA GGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCGGCTTAAACTATCCGTGGGTGATA GAACGTGCTACAAAAACAGAATTCCAAAAAGCACATCCCATTTTATTCCTATTAAAGTGA CCTTTAACTGACAAAAAGAAACCGATGAAAGACATCGATTATATTCCAGAGTTAGAGAGA AACACTACCTCTGTGATGTACTTGGAGGAACTATCTTACTCAGGGTATTTTTCACTTGCA TAAAACAGCATATGCTCTGACCCCCGAAAAAACAATAAAAATCACAAGCTATTCACCATG GCCATCAAAATCCACACGAGTTCAAATCACAGGAAAGAGTTGATAAATACACTGTTTATA GAGACAGTTTATACTTTAGCCTCAGCTCAGTGATTGAATCCTGCGATGAAGAATTAAAAC GGGAATAATAAATATAAAGGACCAAGGAAATGAGCTA |
| GenBank Accession | FR803103 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr3:21275215 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T8H10 |
| Hit Gene Code | At3g57470 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Insulinase (Peptidase family M16) family protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
|
Last Updated on 10.06.2021 13:37 |
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