SimpleSearch - Line and FST details
Line specific information
Line ID | 106A05 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N410085) |
Segregation Analysis | 101:99:94 |
Confirmed for Hit | At1g28140 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit At1g28140
Sequence (A. th genome BLAST matches underlined) | >33-K012499-022-106-A05-35St TGACGTAAGGGATGACGCACAATCCACTATCCTTCGCAAGACCCTTCCTCTATATAAGGA AGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTC GGTTTAAACTATCAGTGTTTGAAAAGAAGGCTACAAATACAAATACAAATATAAATAACT CTACGCAAAATGTTATTTTCACATTGGTGTTCACTCATAAATCTGTTTTCACGTTCATGT CCCTTTCTGATGATGAAAAGAAGGCTATAGTTGAAAAGCTCGAGCAAGAAAAGTTGGGGT AAGAATCTGAATGATAGTGGAATGTTTTAAGCATCTTCAAGAACAGGTAAATATTTTGTA TCCATAGATTCTATTTACCACTGAGGAGAAATGCTACCATAAACACAGTTTGTAGATTGT GATTAGTAGCTTAGAAGTGACAATACAAATGCCATCAAAATGTCCATTCCCTGATTGAGA GTTGGTTGCATCTCATATTTTCTTTTTTGACATTCAAAAAAAAAAAAAAAAAAAAAAGGG GGCCCCCTGTTTTTACCCCCCCCCCTTTTTCCCCCCCTAAAAA |
GenBank Accession | AL756142 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr1:9833175 - go to primer design |
BLAST e Value | 3e-168 |
Hit Clone Code (BAC ID) | F13K9 |
Hit Gene Code | At1g28140 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | integral membrane family protein |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Gene hit At2g36550
Sequence (A. th genome BLAST matches underlined) | >33-K012378-022-106-A05-8409 NTGATCCATGGTAGATTTCCCGGACATGTAAGCCTTTACAATTGATTGATATTACCACCT CGTACTCAGAACTTATTATTGTCCCTTGATACCCGCTTGGTTACTTAATCGCGGAAGATG CTAGAATTAAGATGCTATTGCATTCGCTTACTATTGATCACATTAACACTCTACTCATTT CAGATCTAAGAATAAAGGCGAATAACCTCTGATTCATTATTAGCTAACCTATTTCCTAAG GAAGAAATTTTGGCAATGTTATATGTCGAAACAAAGAGAAGCAAATGTGAACGAAATAAG TTTTATTTTGACCATTGGATTGTAAAGAAACCAATGAGCTGAATGTTTAAAAAGTCCAAA AGAAATAACATCGAAAATTTAACAGATGAAGTCCAACGAAAATGAAAATGATAGCAAAGA TCATCCACAGTTTAGAGAGACTTTTATGAACTTAAGAAGTCCAATGTTTTTTGATGAGAT TACTTGTCTTGCTCCGGTGTACAGCTGTACCACCCTATGGGATCCTCCCTATAGTGAGCC GTTTTAACTAACCCCCCGGTAACATGGACCCGGACAGTCTCGTCCTAGCCTCGTGGACTG AGGGAGACACATGGGCCCGGACCCCCCTGTGAAATATGTTGTTTTTTAGGAAGGGTTGTT CGCTCTACGGGGAAGCGGAAAGGCCATGAACGCTTCGGCGAGAGGGGGGGAAAGCGCTCT GGGGAGAACCGGGCGCTGTGAGGAAAACGCTGCAAAGTATAAGTGCCCCCGGGCCCACTG GGGGAAGGCGGGGGGGAAAAGAGTGTCGCCCGCCGGTGCACAACTGCCGCCCTGGTGCAT GCAGGGGACAACAAACACACATTACGCGGTTCGGGTCCGCAGGGCGCGAGAGACGAATGG A |
GenBank Accession | AL756141 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr2:15328772 - go to primer design |
BLAST e Value | 5e-164 |
Hit Clone Code (BAC ID) | F1O11 |
Hit Gene Code | At2g36550 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | haloacid dehalogenase-like hydrolase family protein |
Insertion Classification | CDSi |
Confirmation Status | unknown |
Last Updated on 10.06.2021 13:37 |