SimpleSearch - Line and FST details


Line specific information

 
Line ID 106A05
Vector Used pAC161
Line Availability available as T3 set from NASC (N410085)
Segregation Analysis 101:99:94
Confirmed for Hit At1g28140
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit At1g28140

 
Sequence (A. th genome BLAST matches underlined)
>33-K012499-022-106-A05-35St
TGACGTAAGGGATGACGCACAATCCACTATCCTTCGCAAGACCCTTCCTCTATATAAGGA
AGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTC
GGTTTAAACTATCAGTGTTTGAAAAGAAGGCTACAAATACAAATACAAATATAAATAACT
CTACGCAAAATGTTATTTTCACATTGGTGTTCACTCATAAATCTGTTTTCACGTTCATGT
CCCTTTCTGATGATGAAAAGAAGGCTATAGTTGAAAAGCTCGAGCAAGAAAAGTTGGGGT
AAGAATCTGAATGATAGTGGAATGTTTTAAGCATCTTCAAGAACAGGTAAATATTTTGTA
TCCATAGATTCTATTTACCACTGAGGAGAAATGCTACCATAAACACAGTTTGTAGATTGT
GATTAGTAGCTTAGAAGTGACAATACAAATGCCATCAAAATGTCCATTCCCTGATTGAGA
GTTGGTTGCATCTCATATTTTCTTTTTTGACATTCAAAAAAAAAAAAAAAAAAAAAAGGG
GGCCCCCTGTTTTTACCCCCCCCCCTTTTTCCCCCCCTAAAAA
GenBank Accession AL756142 [GenBank]
Graphic View Graphic view of gene At1g28140
Predicted Position of Insertion Chr1:9833175 - go to primer design
BLAST e Value 3e-168
Hit Clone Code (BAC ID) F13K9
Hit Gene Code At1g28140 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation integral membrane family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At2g36550

 
Sequence (A. th genome BLAST matches underlined)
>33-K012378-022-106-A05-8409
NTGATCCATGGTAGATTTCCCGGACATGTAAGCCTTTACAATTGATTGATATTACCACCT
CGTACTCAGAACTTATTATTGTCCCTTGATACCCGCTTGGTTACTTAATCGCGGAAGATG
CTAGAATTAAGATGCTATTGCATTCGCTTACTATTGATCACATTAACACTCTACTCATTT
CAGATCTAAGAATAAAGGCGAATAACCTCTGATTCATTATTAGCTAACCTATTTCCTAAG
GAAGAAATTTTGGCAATGTTATATGTCGAAACAAAGAGAAGCAAATGTGAACGAAATAAG
TTTTATTTTGACCATTGGATTGTAAAGAAACCAATGAGCTGAATGTTTAAAAAGTCCAAA
AGAAATAACATCGAAAATTTAACAGATGAAGTCCAACGAAAATGAAAATGATAGCAAAGA
TCATCCACAGTTTAGAGAGACTTTTATGAACTTAAGAAGTCCAATGTTTTTTGATGAGAT
TACTTGTCTTGCTCCGGTGTACAGCTGTACCACCCTATGGGATCCTCCCTATAGTGAGCC
GTTTTAACTAACCCCCCGGTAACATGGACCCGGACAGTCTCGTCCTAGCCTCGTGGACTG
AGGGAGACACATGGGCCCGGACCCCCCTGTGAAATATGTTGTTTTTTAGGAAGGGTTGTT
CGCTCTACGGGGAAGCGGAAAGGCCATGAACGCTTCGGCGAGAGGGGGGGAAAGCGCTCT
GGGGAGAACCGGGCGCTGTGAGGAAAACGCTGCAAAGTATAAGTGCCCCCGGGCCCACTG
GGGGAAGGCGGGGGGGAAAAGAGTGTCGCCCGCCGGTGCACAACTGCCGCCCTGGTGCAT
GCAGGGGACAACAAACACACATTACGCGGTTCGGGTCCGCAGGGCGCGAGAGACGAATGG
A
GenBank Accession AL756141 [GenBank]
Graphic View Graphic view of gene At2g36550
Predicted Position of Insertion Chr2:15328772 - go to primer design
BLAST e Value 5e-164
Hit Clone Code (BAC ID) F1O11
Hit Gene Code At2g36550 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation haloacid dehalogenase-like hydrolase family protein
Insertion Classification CDSi
Confirmation Status unknown


Last Updated on 10.06.2021 13:37