SimpleSearch - Line and FST details


Line specific information

 
Line ID 106E10
Vector Used pAC161
Line Availability available as T3 set from NASC (N410138)
Segregation Analysis 50:31:14
Confirmed for Hit At5g41070
Parent of DUPLO pair 11778
Parent of pair(s) none

Gene hit K24M7

 
Sequence (A. th genome BLAST matches underlined) 
>77-K012499-022-106-E10-35St
TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGCAGACCCTTCCTCTATATAAGGAA
GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG
GTTTAAACTATCAGTGCTTGACCTTGTCCCTTATGCAAGAGGGGGTTGGAAAGCGATGGG
ACTATNATGAACAATTAATTCTCTATGGGATCCTCCCTATAGTGAGCCGTTATACTCAAA
TAAATTCAACAAACAAGATACTTTAATACTTATTCTTCTTCAAATTCATTGATTTAAAAC
TTCAATGTTTCCAACTTTCCATATCTTAGAAAAATAATTCTTATTCAATTCTATTTATGA
AATAAAGAAAGTTAATCTTTTCTTTCCTTTGCACAACTTAACATTTAATCTATCTCCACT
TACTAATGTAATATATATGGTTTAGGAAATTTCCGTGACAAAAAAAAAAAAAAAAAAACT
CAATTTTGGCGTATCCATTGAACTTAAAATAAAGCCCTATGGAATCCTCCCTATAGGGA
GenBank Accession AL756189 [GenBank]
Graphic View Graphic view of sequence AL756189 of line 106E10
Predicted Position of Insertion Chr5:21305754 - go to primer design
BLAST e Value 2e-123
Hit Clone Code (BAC ID) K24M7
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At5g41070

 
Sequence (A. th genome BLAST matches underlined) 
>77-K012378-022-106-E10-8409
TGATCCATGTAGATTTCCCGGACATGAANGCCTTTACAATTGAATATATCCTGAGTATTC
ATATTACTCAATTTAACAAATTGACGCCGAGTTGACAGACTGCCTATGGGATCCTCCCTA
TGGTGAGTCGTATTACTCACACGGAAATCCTTGTCAAGTGGTCGTTACATAAATAAATTA
TAGACCATTGTGTTTCCGTTTGATTGAATGCGTTCTTGTTAGGATTGAAGGGTCTTGAAT
TTTGTAAAAGTCCGACATGAACTTTGAATGCTCGCGAATCGCTCAGAGAACGAAAACCAG
GAGACACCATTATTTAAGGAAGAACATTAGAACTATAAGTGCGAGTGTGCAAGACAACAA
TTAATGGGTTCTCGATTTGTCTTCCTCCAATGATGCACCGAATGCTCTGCTCTGCTGCCA
CCTCTTCATCATTAATGGNTGTCGCTCTGTAACGTCGGTTCCAACCAATCAACTAAATAA
TTC
GenBank Accession FR803131 [GenBank]
Graphic View Graphic view of gene At5g41070
Predicted Position of Insertion Chr5:16439862 - go to primer design
BLAST e Value 2e-61
Hit Clone Code (BAC ID) MEE6
Hit Gene Code At5g41070 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation dsRNA-binding protein 5
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37