SimpleSearch - Line and FST details
Line specific information
| Line ID | 106F05 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N410145) |
| Segregation Analysis | 50:20:15 |
| Confirmed for Hit | At1g58030 |
| Parent of DUPLO pair | 3065 |
| Parent of pair(s) | none |
Gene hit F21J9
| Sequence (A. th genome BLAST matches underlined) | >38-K012499-022-106-F05-35St TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGCAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTAGTAACTGTTCGGACGACTATTCTGAAATGCTCTCATAGTGACGGGGATCA TATTCCTGTTATCCACGAGATGGAACATATGTTCCACTTTTCGGACTAACCGGTGACACC AAACAAGAACAGCTGTACTAACTTACTGCTCCATTTTCGGAGGCCTAATTAAACATTCTA TGGGATCCTCCCTATAGGGAGTCTATGTACTCAGCAATAAACAAATTATTCTAATTCGGA AATCTTTATTTCGACGTGTCTACATTCACGTCCAAATGGGGGCTTAGATGAGAAACTTCA CGATCGATGCCTTGATTTCGCCATTCCCAGATACCCATTTCATCTTCAGATTGGTCTGAG ATTATGCGAAAATATACACTCATATCCCTAAATACTGACCGGTTGAGCCTCCCATTCAGG GGAGCCCCATTAACCTTACATAATTC |
| GenBank Accession | AL756195 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:8672690 - go to primer design |
| BLAST e Value | 1e-13 |
| Hit Clone Code (BAC ID) | F21J9 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At1g58030
| Sequence (A. th genome BLAST matches underlined) | >38-K012378-022-106-F05-8409 NTGATCCATGTAGATTNTCCCGGACATGGAAGCCTTTACAATCGAAGCTTCGAATGATTT TGTACACAATTGTTTGAAGTGTAACAAGGACTATGATCTAACGAAACTAATCATTTTGAC TCTTTAATCGCCTTAGACTTCGAGAGTCTCGAGAGAGAGAGACTTAGTGACTTCATCCCT ACCACTGATTAACTATGTGATCTATTCCCAGAGATTGCGCTTGGGAAGTGACGTGTTCAC GCTTTGCCTCTACTATCCCCAAGAGCAAGAGATAAATTCACTTGCTCTAACCAGACTAGC TCGGCTTTAAACAATAGAGGCGACTATGGGATGCTCCCTATAGAGAGTCCTTATCACTCC AGAATGTCCAAAAGTGTGTCTCGCATCATCCTGATCTATGGAACTCAGAGCAGTCAAACC AGCAAGGAGGAGACATCCACCAACACCACACAACGGATATCTAATAAGCCTGTTAACCAT TTTAGATTTTTTTTGAAAGAAGAGCTAAGATGATGATAAGCAATAAAAGTTCTGAGAAAA TAATGTTTAAAAATAGACAATGATGAACTAACCCTGGGAAGCCTAGGCTTGATGCCGCAT AACTTAAAAGGGAGGCCCCACCACATGTGAACATAATGCTCCATCCAGCGGCAATCCTTC TGGGTTCCTCGCTGAGACCCACTGCAAAAGTATTGCCAATGTGAAGGTTGCCCTAAACCT GTGGTTCCTCCTAAAGATGGCCGGGCCTTCTTTTTGTAACTTACAACACCCTAG |
| GenBank Accession | AL756194 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:21464503 - go to primer design |
| BLAST e Value | 3e-162 |
| Hit Clone Code (BAC ID) | T15M6 |
| Hit Gene Code | At1g58030 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | cationic amino acid transporter 2 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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