SimpleSearch - Line and FST details
Line specific information
| Line ID | 107F12 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N410248) |
| Segregation Analysis | 50:50:42 |
| Confirmed for Hit | At1g64583 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 84962, 84986, 84987, 84990, 84991, 84993, 84997 |
Gene hit At1g64583
| Sequence (A. th genome BLAST matches underlined) | >94-K012498-022-107-F12-35St TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGCAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCC CCTGAAAAGCTTGGGAGTTATTTTGTAGACTCCCTGTCGAAGGAGTGAAGCCTGATGCTA TGGGATCCTCCCTATAGTGAGTCGTTNTACTCAAGAATGGGCCTAGGCGTGAAGCGGATG AGCTGATTACAAGAATGAAAGAGGAGGGGATCATATGTCAAATGAATGCGGAAGATGACC ATCTAGAAGAGCATAGCTCAAGTAATAAGGAGATAAGCCTTGTCAGCTAATGTTATATGA TCAGAGTCCAGTCACGTTTTTTTGTTGGGACTCTGAGCTAGGCTTGTTTGTTACAGTCAT ATGAGGGGACTGTGTAGATTGGTTTTGGTCAGGAGAAGCTTGAAGTGTGTGGTACTTACT GACCGGTGGGTAAAGAAGCACTCAAGCATAAAACTGCTGCAGAGATGGTGTTGCATCTTT AGAATTCTGTATGCTTGTACATTAGTATTAACTAAATTCATTAATTTGACATCTAACTTA CTTTGTGTTGTAATTCTCTTGTATGCAATGAAAATGAAATTTCAAATATTGTAAATGCAA ACTCTTGTGTTATTGAAATGTTGAAAACATATCAGTTTTGAAAACAGTAATCTGATTGGA CTTTGAAGACATTTTAAAGTCACAATCACAATTTGTCTCGAAACGACGCCGTGTCTATGG GGACCTCCCTTAGTGGCGNNNNACCCCCCCNNNNGGGCCGCCGGGAGACAGGGCCGTCCT TGGTAAGGGTCGGCCCAAAGTTTGAGAAGAATGTGGAAA |
| GenBank Accession | AL756291 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:23987427 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F1N19 |
| Hit Gene Code | At1g64583 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g50920
| Sequence (A. th genome BLAST matches underlined) | >94-K012377-022-107-F12-8409 CCTTATCTCTCTCTCTATACTATCTCCGGTCTAGATTCTTTATTTTTTTTCTTTATACAG GAGGGGTATATAACACTTGTTCGGGAGCACCATCGCGCACGCTATGGGATCCTCCCTATA GGGAGTCGTATTACTGCAAGGGGGCTGGCCCTATGCATGCTTACGGGCGTACTCAATTGG GTCAAAAAAGGCTAGGGGAACCCCCTCCCTTTATAGGGGAAGTGCGGTAACCCTTTTTAA GGAAAGCCCAAAAGGGCCCCCTCTCCCGGGGCGGGGGGGAGCGTGGATTTCCCCCCGAAT AAGGCCCTTGGAAACCCGGCTTTTTGACCC |
| GenBank Accession | AL756290 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:20720348 - go to primer design |
| BLAST e Value | 1e-23 |
| Hit Clone Code (BAC ID) | K3K7 |
| Hit Gene Code | At5g50920 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | CLPC homologue 1 |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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