SimpleSearch - Line and FST details
Line specific information
| Line ID | 107H07 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N410267) |
| Segregation Analysis | 50:49:34 |
| Confirmed for Hit | At4g23590 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 7490, 10204, 11314, 81893, 81897 |
| Note |
Gene hit At4g23590
| Sequence (A. th genome BLAST matches underlined) | >56-K012377-022-107-H07-8409 NTGATCCATGTAGAATTTCCCGGACATGAANGCCTTTACAATTGAATATAGACTGGACAT TAACTTTATTTATGTATATATACACGTTGGGCATCCGGTAGGCCAATACTTGGAGCATAT GCGTGTCCCGTACCGAAAAGGACAGCCTTAACAGCCGCCTTTTCTGCGGTATGGCTGGTC TCTGTCTCTTTACTTAATGGAGGCATAATAAGCTTATCACTTGAGGGCTACACATACTGA CACATTTCAGAACAGTAAGTGCCTATGGAATCCTGCCTAAAACTATAATTTTAACTTAAA CAGCGTTAGAGAGATGGTAGACGAGAACACTTTTGCGATATTTATAATCAACCCCCACAA TCCCAATGGGAACTACTACACTGAGGCTCATCTTAAGCAGGTATTTACGTACGTATTAGT ACTCTTGGAGAAGTATATATTCACATGATTGGCTATGGGATCCTCCCTATAGTGAGT |
| GenBank Accession | AL756314 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:12307527 - go to primer design |
| BLAST e Value | 2e-83 |
| Hit Clone Code (BAC ID) | F9D16 |
| Hit Gene Code | At4g23590 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Tyrosine transaminase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g38430
| Sequence (A. th genome BLAST matches underlined) | >56-K012498-022-107-H07-35St TGACGTAAGGGATGACGCACAATCCACTATCCTTCGAAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCAGTGTTCAAAAGTCGTTAATGGCTGCGGATCAAGAAAAAGTTGGAATA GAAACAGAATACCCGCGAAATTCAGGCCCGGTTGCCATGTCCTACACGCCGAAATAAACG ACCAAATTAGTAGAAAAATAAAAACTGACTCGGATACTTACGTCACGTCTTGCGCACTGA TTTGAAAAATCTCAATATAAACAAAGACGGCCACAAGAAAAAACCAAAACACCGATATTC ATTAATCTTATCTATGGGATCCTCCCTATAGTGAGTCGCTTAACCTAGATCGATCCGTCG TACCAGCTTTGCAATTCATACAGAAGTGAGAAAAATGGCTTCTATGATATCCTCTTCAGC TGTGACTACAGTCAGCCGTGCTTCTACGGTGCAATCGGCCGCGGTGGCTCCATTCGGCGG CCTCAAATCCATGACTGGATTCCCAGTTAAGAAGGTCAACACTGACATTACTTCCATTAC AAGCAATGGTGGAAGAGTAAAGTGCATGGTGACGGNGTTCGGCATTCTGAATCTCACCGA GGACTCCTTCTTCGATGAGAGCCGGCGGCTATGGGATCCTCCCTATAGTGA |
| GenBank Accession | FR803168 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:15385032 - go to primer design |
| BLAST e Value | 6e-06 |
| Hit Clone Code (BAC ID) | MXI10 |
| Hit Gene Code | At5g38430 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Ribulose bisphosphate carboxylase (small chain) family protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
|
Last Updated on 10.06.2021 13:37 |
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