SimpleSearch - Line and FST details


Line specific information

 
Line ID 108D09
Vector Used pAC161
Line Availability available as T3 set from NASC (N410317)
Segregation Analysis 50:49:37
Confirmed for Hit At3g54580
Parent of DUPLO pair none
Parent of pair(s) 6907, 6932

Gene hit F17I5

 
Sequence (A. th genome BLAST matches underlined) 
>68-K012313-022-108-D09-8409
NTGATCCATGTAGATTTCCCGAACTGAAGCACTTTACAATTGAATCTATCCTGATAAGGC
CCATGTTTGCATTGCAGATCGGAATGGCATCTTCCCTATAGTATGTAGCCTACTTACTAT
TATGCCGAACGTTGAAGGTTTACCGACTAGGACCCGTACTCACTTGGTGTCCTTTGTAGA
GACATCCTGATATAGTAATACCACCCTGACACCATGACTACAAAAGACTGTGTCCATGGT
GGAAATAAATGAGCTCTCTTTGTAGCAAGTGAACCTTCATGAGCACAGGAGGCATCTGAC
ACACACCCAAAGTTTTCCTATGGGAATCTCCCTATAGTGAGTCACTTNACTCATTACTTG
TTCTGCCGAGGGCAACGATGGCACTATTAGATTCTACTATGTAAGTCTTTTATGTTTAGT
AATTGATACACAGAAGCTGTGAGTGCCTCTGAATTAGGACTCATTTTTCTATTTCTTCTG
TTTTAACATAAATATATATTTGCAGAAGTTACTGAATATAAATGGAACCATTTTATTTAC
CTATGGGATCCCTCCTATGGGGAGTCGTATTTACTAAACAGCCGCAAAAAAGGGAAACGG
CGACAACAAAAAAACCAAAGGAACAAACATGCCAATAGACGAGAAATCTGATNGAAAAGG
AAGAGGAAAAAAAGCAAAAAAAAGGAAAAAAGAAGAAAGATAAAGAACAAAGATAACACA
CTAGGAGCGAGTAATGAAGAAAGGCAAGAAGAAGGTAGAAGAGACAAACAAAAGCAGAGA
GCAAAAAAAAGACCGGAAAAAGATGACAGACAAATCAGACAAAAGTGCCCGTCGAAGGAC
AGGGGGATGACACGAACGAAGAAGACGACGAGAAAAAGAACAACAAGAAAT
GenBank Accession AL756371 [GenBank]
Graphic View Graphic view of sequence AL756371 of line 108D09
Predicted Position of Insertion Chr4:16289685 - go to primer design
BLAST e Value 3e-48
Hit Clone Code (BAC ID) F17I5
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At3g54580

 
Sequence (A. th genome BLAST matches underlined) 
>68-K012334-022-108-D09-35St
ATGACGTAAGGGATGACGCACAATCCCCTATCCTTCGCAGACCCTTCCTCTATATAAGGA
AGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTGAGGAATACAGTGG
TGGTGGAGAGCTATCTGTGTATGGATCATATGCAGCAACCATTGTTGCCATGATGACAAC
TCCTATGGGATCCTCCCTATAGTGAGTCGTTTAACTC
GenBank Accession AL756372 [GenBank]
Graphic View Graphic view of gene At3g54580
Predicted Position of Insertion Chr3:20203671 - go to primer design
BLAST e Value 4e-38
Hit Clone Code (BAC ID) T14E10
Hit Gene Code At3g54580 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Proline-rich extensin-like family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL756372 [GenBank]


Last Updated on 10.06.2021 13:37