SimpleSearch - Line and FST details
Line specific information
| Line ID | 109A04 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N410372) |
| Segregation Analysis | 50:47:36 |
| Confirmed for Hit | At1g78680 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 9641, 11122 |
Gene hit At1g78680
| Sequence (A. th genome BLAST matches underlined) | >25-K012333-022-109-A04-35St NACCTGGCGTAAGGGATGACGCACAATCCCACATCCTTCGCAAGACCCTTCCTCTATATA AGGAAGTTCATTTCACTTTGGAGAGGACAGGGTACCCGGGGATATGATTGTCGTTTCCCG CCTTCGGTTTAAACTATCAGTGTTTGATTGAACTGGAAGCCGGTCACTGGATATTTTGTT GATTGAACTGTTGAAACATAAACCTGGATATATGTCTTAATAGATTCGGACTATAACGGT CACAGGCTATTGAATCTTTTTATGGATTCTTGGGGACATAAAAATACCTTGCCGTTGACA TCAACGCATGATGCGACAATTTTAAAGAAATTAGACAGACATTTATCTTCCTTCAAAGCT TTGTGGTGAGATACCAAACTGGNAAATAAGGACAATTCATATCAGAAAGCAGAGAGAACC GATGATAATAACCATTCAAGAACAAGAAATCAAAGAAGTGGCGAGAAAAGTTGCTTAACT GCAGAGGTCAACAAAACTATGAGTATTGAATTGAATGTATAAGTATGTTTAGCAACAAAA GGGGGAAAAACTATATTCCATAGTATTAACTGTAAGGAACAAAGTACTGGGGTACTAATA CTACTAACCCCGAATGATTTTGCATAACCAGACAATCTGTACCGGAGGTTTTTTCAACAG CTCTTGAAGAAANTCTGCACTATGAGACATTTCAAAATACATATGAAATATTTGACTATA ATNTTTGGAATCTGGATATACACCATTCTCATGAAAAGCTGGATTACCTTTGAAAAATGG NTCCTTGGAATTTAACATTTNAAACGAACTGAAGACTGGATGCAGAATTTCTTGCATCCA TTTTTTCAAAAAGGGCTTTGTGTCTTGTTTACAAGGCCCCATATTAAAAAATTTTAAAAG GGGGTTAAACTA |
| GenBank Accession | AL756420 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:29595424 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F9K20 |
| Hit Gene Code | At1g78680 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | gamma-glutamyl hydrolase 2 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g49300
| Sequence (A. th genome BLAST matches underlined) | >25-K012312-022-109-A04-8409 TCACAGGTTAACTTTACGTCTCTCTTTAGTCTTTCCGCCTATGGNATCCTCCCTATAGTG AGTCGTATTACTCANNNGNNNGNNNGAGNNGNGGGGAACGTATCGTGAGAAAAAGATGCC GAGCAGGGGGGACCAGTGAAAATACCACATTCGTGGGACGCGAGACAGGAGACCTCTGGC GCGGCATACTATCCAGAGGAGCCTATCTGCTATGAGGCGCATGACAAACTATGGTATGTA CCAGGACCTAGGCTGGACGAGACTCGAGAACCCGTTGCTCAAAATGTAGGTTAACCCTTG GAGGGATCATCGGGTAAACCAGGCTGCAGTGTTTTTGTTGATTTCAACTTTTATGGGAGG CTCCCTATATAGAGTCGTATTAGTCATGANCCCCCACGCGTTACGCAACGACTACGCGGA AACAAGACGAAAACCTATCGGAGTCGGGGATCAGAGACAAGAGCAAATGATCA |
| GenBank Accession | FR803193 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:19984708 - go to primer design |
| BLAST e Value | 7e-09 |
| Hit Clone Code (BAC ID) | K21P3 |
| Hit Gene Code | At5g49300 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | GATA transcription factor 16 |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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