SimpleSearch - Line and FST details


Line specific information

 
Line ID 109A09
Vector Used pAC161
Line Availability available as T3 set from NASC (N410377)
Segregation Analysis 50:49:36
Confirmed for Hit At3g24350
Parent of DUPLO pair 1218
Parent of pair(s) none

Gene hit At3g24350

 
Sequence (A. th genome BLAST matches underlined) 
>65-K012312-022-109-A09-8409
TTGATCCATGTAGATTNTCCCGGACATGAAGCACTTTACATGAGAGTATATCGCTGCTCA
TCTCTATCAGATGCTCTTAAATAATACACAGACTCGCATTCTTCTCGCTTGTATTGCTTT
GAATGCTAAGGCTCCATAGAATGGCACTCCGTGTCCTAATGGAGTGAACATACTTAAACT
CTTTGGTAGTATCCATCAAACGATACTTTAGATCGTAACAACAGTTGCTGAGTGAGTACT
TTTGTCCCTGTCTCTATGGGATCCTCCCTATAGTGAGTCGATTTACTCAACCAGGGAGAA
GGNGGGTGGGGACAGAGATAAATTTACAATAAAGTAAACCGTTTATAAAGTCCCGACAAG
GGTTCCTGCCAGTAAAAAAATGGGAAAAGGCTTGACCTGAAAAATGGGGGGTCCCTTGTT
TTCAAGCAAAGTCCTCCATCTGTCCTATCTCTAACATTCTTCACCATGTTTTTAGATCTT
CCAACTGGAACTTACTTACTCCCGGGGGAAGCCAATTTTACTTTATAACCCTTACCTATG
GGATCCTCCCTATAGGGAGTCGTTTTAC
GenBank Accession AL756425 [GenBank]
Graphic View Graphic view of gene At3g24350
Predicted Position of Insertion Chr3:8838558 - go to primer design
BLAST e Value 1e-37
Hit Clone Code (BAC ID) K7M2
Hit Gene Code At3g24350 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation syntaxin of plants 32
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit T12J13

 
Sequence (A. th genome BLAST matches underlined) 
>65-K012312-022-109-A09-8409
TTGATCCATGTAGATTNTCCCGGACATGAAGCACTTTACATGAGAGTATATCGCTGCTCA
TCTCTATCAGATGCTCTTAAATAATACACAGACTCGCATTCTTCTCGCTTGTATTGCTTT
GAATGCTAAGGCTCCATAGAATGGCACTCCGTGTCCTAATGGAGTGAACATACTTAAACT
CTTTGGTAGTATCCATCAAACGATACTTTAGATCGTAACAACAGTTGCTGAGTGAGTACT
TTTGTCCCTGTCTCTATGGGATCCTCCCTATAGTGAGTCGATTTACTCAACCAGGGAGAA
GGNGGGTGGGGACAGAGATAAATTTACAATAAAGTAAACCGTTTATAAAGTCCCGACAAG
GGTTCCTGCCAGTAAAAAAATGGGAAAAGGCTTGACCTGAAAAATGGGGGGTCCCTTGTT
TTCAAGCAAAGTCCTCCATCTGTCCTATCTCTAACATTCTTCACCATGTTTTTAGATCTT
CCAACTGGAACTTACTTACTCCCGGGGGAAGCCAATTTTACTTTATAACCCTTACCTATG
GGATCCTCCCTATAGGGAGTCGTTTTAC
GenBank Accession AL756425 [GenBank]
Graphic View Graphic view of sequence AL756425 of line 109A09
Predicted Position of Insertion Chr3:914051 - go to primer design
BLAST e Value 7e-46
Hit Clone Code (BAC ID) T12J13
Insertion Classification Genome Hit
Confirmation Status unknown


Last Updated on 10.06.2021 13:37