SimpleSearch - Line and FST details


Line specific information

 
Line ID 109B06
Vector Used pAC161
Line Availability available as T3 set from NASC (N410386)
Segregation Analysis 50:50:46
Confirmed for Hit At3g06620
Parent of DUPLO pair none
Parent of pair(s) 92619, 92622, 92625, 92626

Gene hit F3D13

 
Sequence (A. th genome BLAST matches underlined) 
>42-K012312-022-109-B06-8409
TTGATCCATTGTAGATTTCCCGGACATGAANGCCTTTACAATTGAATATATCCTGATCCA
TGTAGAACATTCATCTCTATACTACAACAAGTAAATAATCTGTTATTTTTTACAAAAAAC
CCCTCAAAATCACTGTTTTTGCCTCAATGTTTTGTTTTTTGTTTTTTCTTGGTAAGTCAA
ACTTTAAACTTTTTTTCTGGGTGGTTGACTATAATACATGTGCATTTATCATATTTATTT
TCTATGGGAGTCCTCCCTATAGCGAGTCGTATTACTCATATACATTGCCCAAAAAGGAAA
ACTATAGAGACACGCACTATGGGATCCTCCCTATAGTGAGTCGTTNTACTC
GenBank Accession AL756433 [GenBank]
Graphic View Graphic view of sequence AL756433 of line 109B06
Predicted Position of Insertion Chr4:591177 - go to primer design
BLAST e Value 5e-16
Hit Clone Code (BAC ID) F3D13
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At3g06620

 
Sequence (A. th genome BLAST matches underlined) 
>42-K012333-022-109-B06-35St
NACCTGACGAAGGGATGACGCACACTCCACTACTCCCTCGAAGACCCCTCCTCACTACAA
GGAAGTTACTCTTACTTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGC
CTTCCTCTACATGAATCCATTGCTGATCCATGTACAATTCCTCTTTCTTCTTTCTTCTTT
TGATTGTTTGTCTCACTATTTGCGAAGGAAGTCTCTTCCGTCTACTACAGAAGAGCACGT
CACAACTGGATTGGAGGCGGCGCATCCATATGGCCTTGGACATTGCACGTCTTAGTTGCA
CATTCACTTGACATGTAACTTTTCCATTTCTATGAGCATTGGCAGTTGCATGTGGACAAT
GTTCTAAGTCTGAGCTACTCTATTTGTTTACTTCTTTGTATTTGTCTTGTGATCATTCTT
TTCCCCTCCTATTTGACTCAGTCAACGTACATCTCATCCAGCATATTACATGATTCTTCA
CACAGGCTCGCGGTATGAATTATCTTCACCATTGTAGTCCACCCATTATCCATCGTGATC
TGAAGTCATCAAATCTGCTGGTAGACAAGAACTGGACCGTTAAGGTAAGATATTCACCTT
GAGACACTTTTACTTTCCTGTAATCTATGGGATCCTCCCTA
GenBank Accession AL756434 [GenBank]
Graphic View Graphic view of gene At3g06620
Predicted Position of Insertion Chr3:2064651 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F5E6
Hit Gene Code At3g06620 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation PAS domain-containing protein tyrosine kinase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL756434 [GenBank]


Last Updated on 10.06.2021 13:37