SimpleSearch - Line and FST details


Line specific information

 
Line ID 110C12
Vector Used pAC161
Line Availability available as T3 set from NASC (N410500)
Segregation Analysis 50:4:4
Confirmed for Hit At3g03340
Parent of DUPLO pair 12291
Parent of pair(s) none
Note

Gene hit At1g73210

 
Sequence (A. th genome BLAST matches underlined) 
>91-K030270-022-110-C12-8409
TGTTTGATCCTTCTACGGAAAATCATTTTTGATGATTTGGGATGCCACCCATATTTAGAC
TTTAGTGAAACATTTTCTCCCGCAGGAGAAGAGCAACCTCCCTATAGAGAGATGCACATG
GGACTTTTAAACATCCTCCGTCTGATGGTGATGCGAGAGAAGCAATCGATCCATGATAAC
CATCAAGTCACCAGACAGGCGCGCAATAAGATCGCAAACTATTTGAACACATGTATGGCA
TCATTACTGAATAAGACAACCTTGTAATGATACAGAACCAGAGGATATACCAAAGCAACC
AAGAAGATTCAACCAAAACTCAGTATGGGATCCTCCCTATAGTGAG
GenBank Accession FR803240 [GenBank]
Graphic View Graphic view of gene At1g73210
Predicted Position of Insertion Chr1:27529577 - go to primer design
BLAST e Value 1e-39
Hit Clone Code (BAC ID) T18K17
Hit Gene Code At1g73210 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation hypothetical protein (DUF789)
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 110D06

Gene hit At3g03340

 
Sequence (A. th genome BLAST matches underlined) 
>91-K012311-022-110-C12-8409
TTGATCCATGTAGATTNTCCCGGACATGAANGCCTTTACACGTGAATATATCACCTTACC
TGGTGCACGATACTATCTTCATTGGAACTAACCCGACCGATTGCATCTATAAATAGATCC
TTTTAGGACCCTAAGGTCTTACTTCCGAGGAGTCCCTGTTTATTGTAATACACACTTGAT
CACATCTTGAATCCTCAGTTATCTGCTCCTATGTCTTCTCAGACATACCAACAAGATGCG
ACTATGTGACATATGTGGAGCATTCTTGATCGTCTATGACAGGTTAAATTCCTTGCTCAA
ACTTTATGCCTTATTGTTTCCATTTTGGATCGATAGAAAAAAAAGGTAGAAATAGATCTT
TCGACTCCTGCTATTGTACCTTCTCCTTTCACCATCCAGCTTTTTTGGCACGATTACTTT
TGCAGCTATAATATATGTGCGTTCTTTTCTTGATCTTATTGAGCTTGAAGGATCTTACTA
TGGGATTCTCCCTATAGCGAGTCTATTAACTCAAAATCTTAGATTACCCAGTAGAAATTC
CCAGCCGGCGAGGAATACTATGGGATCCTCCCTATAATGAGTCGTATTAC
GenBank Accession AL756534 [GenBank]
Graphic View Graphic view of gene At3g03340
Predicted Position of Insertion Chr3:788618 - go to primer design
BLAST e Value 6e-77
Hit Clone Code (BAC ID) T21P5
Hit Gene Code At3g03340 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation LUC7 related protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37