SimpleSearch - Line and FST details


Line specific information

 
Line ID 110H12
Vector Used pAC161
Line Availability available as T3 set from NASC (N410560)
Segregation Analysis 50:46:45
Confirmed for Hit At2g41620
Parent of DUPLO pair none
Parent of pair(s) 12846

Gene hit At5g58510

 
Sequence (A. th genome BLAST matches underlined) 
>96-K012332-022-110-H12-35St
TTGCGTAAGGGATGACGCACAATCCCCTATCCTTCGCAGACCCTTCCTCTATATAAGGAA
GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG
GTTTAAACTATCAGTGGGATAGTTTGTCGTCGTCTGTGTGATCGGAGGATCTGCAAGAGT
TCCTTACCCATACAAACTCAGAGAGAGACTGAGAGATATTCGTTACGCAATTTATTATGG
CTTCTGTAAGCAAATCGAATCATCTCGAAGAAGATGATGATGCTGAAGAAGAGGTATGCC
AGTTACTACATCCTAAAACTTTTTTGTTCTTCTTCTGCTGTTCGTTTTTGTATTCAATGA
TCAGCAATTGTTTTGCAGGTGCAACATTTCGATGATTTCACTCTATGGGATCCTCCCTAT
AGTGAGTCGTTTAACTCACNNNNGNNCNTNNCCTCTGTACCTCGTTAACTCACATGAGTT
CTGATCTAATTACAGCGGCCAGCGCCTGGACATCGCGCGCAGCGGCGCCCTCGGGACCTG
ATTCCGGAACGGCTGTGGCCGGCGAAGGGCTTGGCTGGGTTCCCTATGCGCAGTGCGATA
ACCGACTCGAGGAAGGCGCACCTCGGTCCCCGGCAGCGTCCTGGGAACCTGACCGGCGAT
GGCGGGTGCTTTTGATCGGCCGCGACACGACAAAGGGCGCTTGGTGGCCTTCCATCCGGG
ACCAGGCTGGGCTGCTTACCCAACCCCACCAGGTCGGGCGGGGCCCATAT
GenBank Accession AL756590 [GenBank]
Graphic View Graphic view of gene At5g58510
Predicted Position of Insertion Chr5:23654508 - go to primer design
BLAST e Value 1e-142
Hit Clone Code (BAC ID) MQJ2
Hit Gene Code At5g58510 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Rab3 GTPase-activating protein catalytic protein
Insertion Classification TS2TE (5')
Confirmation Status unknown

Gene hit At2g41620

 
Sequence (A. th genome BLAST matches underlined) 
>96-K012311-022-110-H12-8409
TTGATCCATGTAGATTATCCCGGACATGAAGCACTTTACAATTGAATATATCCTGCCGCA
GCTGGCGATATAGTCACCCGGTGGAACAGAGCGTGTTGGATACGACGGTCCATCTGAACT
GTGTGCACTATCTCTTTAACGACCCTGTACATCACAAATTACTAAGGGACACTTTTTACA
TTCACCCTACACAGGTATCCATTATTTGTATACTTAATAAGAAGAGTTAACACTTGTATG
TCAATACATATTTTGATTATCCTGTGCCTCAAATGGTTGGGTGCTGTCTGAAAAGGCTCC
ATGATCTTTCAATCCTATTTCAAGAATGTTGGTAATCATTTTGACATGTTTCTTGCTTTT
TATATTCCTGTTCTATGGGATCCTACCTATAGTGAGTCGATTTTACTCACAGAGTTNTTG
AAGTGGTGGCCTAACTACGGCTACACTATGGGATCCTCCCTATAGTGAGTCGTATTACTC
GenBank Accession AL756589 [GenBank]
Graphic View Graphic view of gene At2g41620
Predicted Position of Insertion Chr2:17352828 - go to primer design
BLAST e Value 5e-96
Hit Clone Code (BAC ID) T32G6
Hit Gene Code At2g41620 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Nucleoporin interacting component (Nup93/Nic96-like) family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37