SimpleSearch - Line and FST details


Line specific information

 
Line ID 114H11
Vector Used pAC161
Line Availability available as T3 set from NASC (N410943)
Segregation Analysis 100:95:69
Confirmed for Hit At1g15170
Parent of DUPLO pair none
Parent of pair(s) 662, 5922, 5951, 6000, 6003, 11392, 91590, 91605, 91619, 91630, 91631, 91632, 91633, 91634, 91635, 91636

Gene hit At1g15170

 
Sequence (A. th genome BLAST matches underlined) 
>88-K012504-022-114-H11-8409
TTGATCCCTGTAGATTTCCCGGACATGAAGCACTTTACANTTGAATATATCCTGCATATG
GGACTGACTGATTCTTCTCCTTTAAATGAAGAGCTTACTTGAGTAACTGTCCAATGCCGT
CCAAGTTTCTGCATGGACAGCGGGCGCGCGTGCTGTACAACATGCACAGGATTGGGACCT
GAAAGATCCAGCGATAATGGCGTAAAACACACTTTGACAAACTGATACCCTGATCTGCTA
CAATATTACCAAGCCCTGAGTTGTCAACCAAAAACCAGCAGAGAGGAACGTGGATACAGA
ACACAACATAGGAGGTGATGAGGAGAGGTGTGATCAAACTCTGGTTTTGAAAGTAGCGAG
TGAGCGGCTGTAGAACAGCGTAAGCAAACAGTCCTGGGATAAGCCAGGTGGCATATTTTC
CGGCTTCGTGAGCAATAGAAGGGTCTTGGCCAAGGATCAAAAGAAGCTTTTCCATGTTGA
ACCAAATGAGAGAAAGAGGGAGACACACTAATGCAAGACAGAACATAGCAGTGTAAGTCT
GAACTCCTATGGGATCCTCCCTATAGTGAG
GenBank Accession BX546537 [GenBank]
Graphic View Graphic view of gene At1g15170
Predicted Position of Insertion Chr1:5221600 - go to primer design
BLAST e Value 8e-172
Hit Clone Code (BAC ID) F9L1
Hit Gene Code At1g15170 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation MATE efflux family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37