SimpleSearch - Line and FST details


Line specific information

 
Line ID 116B05
Vector Used pAC161
Line Availability available as T3 set from NASC (N411057)
Segregation Analysis 50:50:46
Confirmed for Hit At2g14440
Parent of DUPLO pair none
Parent of pair(s) 72884, 72945, 72978, 73006, 73038, 73096, 73125, 73150, 73178, 73203, 73228, 73247, 73294, 73295, 73298, 73299, 73302, 73303, 73304, 73305, 73306, 73307, 73308, 73309, 73311, 73312, 73313, 73314, 73315, 73316, 73317, 73318

Gene hit F28J7

 
Sequence (A. th genome BLAST matches underlined) 
>34-K012564-022-116-B05-35St
NTTTTGACGTAAGGGATGACGCACAATCCACTATCCTTCGCAGACCCTTCCTCTATATAA
GGAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCC
TTCGGTTTAAACTATCAGTGTTTTTCTGTATGTGTACCCTTTGATTCAGAAAATATCTAT
ATTCAAAATGTCTACTGGGCCTGGGGGAGTCTTTTTCTGTATGTGTACCCTTTTTTTTTT
ACAATACAGGTTGCGTTTAATCGAGGATCCAAAGAAATTACCATATGCAGCCACATATAA
TTGATGGGGTGATGTATGCATTTGATAGTATTTTTTAACCTCGTTTATGTCATTAGTTTC
TACTGAATATATATTTGGGCTTCATTATCGATAGCGAAATCAAATCATTATTCCGACGGG
TCATTTTCTATATTATTTTATAAAAAATCTTTGCCATTTTTATGTTTTATCTGATGTAAT
TAAAGAGATAGAATCAGATTTTAATGTCTGATTATTTACGGCAATGATTCATTTCGACGA
AAGAATTTTCAAAAGACACAGAATAAAACACGTTTTACAGGAGGCATTAATAATCGCAAT
CATCCGCCATAAATGCTGATACAAATGCAATCTTTCGTTTTAATTATTTTCCTCTTGAAG
GGATCGATCGTGGGAAACATCAAGAAGGTGATAACGAGGCAAACCAAACTATTATTTATT
CTCAAGTATTTAAACTACTCTTACTCTATTTTTGATTTTCTTCAATAAAAGTTCCCAAGC
TACCTGGTACACTTTTATCTTAAAAATGAAAGAAAAACAGCCCTTGAAAGATGAATAGAT
A
GenBank Accession AL756999 [GenBank]
Graphic View Graphic view of sequence AL756999 of line 116B05
Predicted Position of Insertion Chr3:322094 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F28J7
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At2g14440

 
Sequence (A. th genome BLAST matches underlined) 
>34-K012502-022-116-B05-8409
TTTTTTGGGTAAAAAGTTGGAGTATGACGCAAAGTTTTTTAGTTACATGCCAAAGGCTTT
AAAAATTTGTATTGATTTCTATCCATGTTGTGAATTTTGGCAGGAAAACGTGGTGGCCCT
GTCTTGAATTGGCCTGGTAGACTGAAAATAGCTATTGAGTCTGCACTATGGGAGCCTCCC
TATAGTGAGTCGCTTGACTCATNACTNNNCCCAAAGCTTATGTATATCCTCTTTCCTTCT
TCCTTTAAACTATCTTCATAAATAGGTAACATATGAAGATTTTT
GenBank Accession AL756998 [GenBank]
Graphic View Graphic view of gene At2g14440
Predicted Position of Insertion Chr2:6146210 - go to primer design
BLAST e Value 1e-77
Hit Clone Code (BAC ID) T13P21
Hit Gene Code At2g14440 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Leucine-rich repeat protein kinase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37