SimpleSearch - Line and FST details
Line specific information
| Line ID | 117E05 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N411189) |
| Segregation Analysis | 50:47:34 |
| Confirmed for Hit | At1g30860 |
| Parent of DUPLO pair | 12843 |
| Parent of pair(s) | none |
Gene hit At1g14530
| Sequence (A. th genome BLAST matches underlined) | >37-K012820-022-117-E05-35St TGGACGAAGGGATGACGCACAATCCCACTATCCTTCGCAAGACCCTTCCTCTATATAAGG AAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTT CGGTTTAAACTATCAGTGTCCGATTCAAACATCCATTTTTAATTTATAACGATGTATGGG ATCCTTCATATATTAATTCGGGTAACACAATAAATACCTTAAAACAAAAAAAAATGGAAG AAAAATAAAATAAAAATCTATGGGATCCTCCCTATAGTGAGTCGTATTACTCAAGCNCGT NNACCGCTGCTTGCAAACAAAAAATCCACCCCTACCTGCTGCGGTTAGCGAGGGCGGAAA AAAAGCTCCCTCCGCTGGTACCCCAAACGTTCTGATGACAGAATTACTCATATACAAGAG ACTGCCCGCAATAGAAAACGCACCCTGTGCAGACTTACCTCGCGGAGAAATCAATACCCA TATATATGAAGAAGTGGCTGGCACGTTTTTTTATCCCAATGCCCCACCGGGCTTGGGGCC CTTCTTCGACCCCCTCACAAAAAAATGAACCTCCTCGCTAGAAACAACGGGCTTGCCAGA GAAAAGACGGAAATTGTCCCCACTTTACAGTAGAGGAAATAACGACATACACCAATTCTT AGAAAAACACGTCTTCCCCCAATCTTCCTTTTCCAAACACCCCGCAGGCGGGGGGGGCCC ATCTTTGGGACGACCGAAATGAACCAAAAAGACGAGCGCAAGGCGAAACCTAGCCCGCCA CACCGCGGCACCACACACACACAATAATTCGTACTTTCCAATTCACTTTGAGAAAATGAA CAATAACATACCATAAACCACCCCACGCCATCCCACCAAACACGCCACGAATACGCAATT ATAACCCCGACTCCAAACAATTATAATATATCAATTTTTACTCNGTATACTGGCGCTTCG GATTTTTGATATACATTAATACACAACACACAC |
| GenBank Accession | AL757088 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:4973807 - go to primer design |
| BLAST e Value | 3e-24 |
| Hit Clone Code (BAC ID) | F14L17 |
| Hit Gene Code | At1g14530 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | tobamovirus multiplication-like protein (DUF1084) |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
Gene hit At1g30860
| Sequence (A. th genome BLAST matches underlined) | >37-K012519-022-117-E05-8409 TTGATCCATGTAGATTNTCCCGGACATGAANGCCTTTACAATTGAATATATCCTGGAAAT GGCTTCATGCATGACATCCTCTATCATGAGATGTCCCGTGTACAGACACACTCGGATAAG CACTCCAAAAAATGGGAATTGCAACAAGAAGAAGAGGAGGAAGTAAATTTTGAAATTGAT GAAGAAATCAAAGAAGAGCCATTAAGAGGAGGTGAAGAGCAAGATGATAGAGATGACTTG AGCCAATCGTCGTCTTCACATATATCTGCATCGTCTCCTGCAGGATCATGGAGTTCTCAA GACACTGATGTTACTTCCACTCCTGCCTTGGTTGTTCAGAATCCTCAGTCACCTGTGAGT GTTTATCGATTTCTTGTTATACTATAGAAACTCGCAACCGCACTATGGGATCCTCCCTAT AGTGAGT |
| GenBank Accession | AL757087 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:10987394 - go to primer design |
| BLAST e Value | 2e-178 |
| Hit Clone Code (BAC ID) | T17H7 |
| Hit Gene Code | At1g30860 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RING/U-box superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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