SimpleSearch - Line and FST details


Line specific information

 
Line ID 117F08
Vector Used pAC161
Line Availability available as T3 set from NASC (N411204)
Segregation Analysis 50:34:33
Confirmed for Hit At1g04990
Parent of DUPLO pair 2526
Parent of pair(s) none
Note

Gene hit At1g04990

 
Sequence (A. th genome BLAST matches underlined) 
>62-K012519-022-117-F08-8409
NTGATCCATGTAGATTNTCCCGGACATGAANGCCTTTACAGTCGAATATACTTCTGCCGC
GATCTGGCATAGTCCCGGACACCACGCAAGTGTACATACAAGATGGCCATTTCTTTCACC
GGCGACGATATGGATGCTAGTATTCATCGGATAGACACCCGGAACACTTGTAATCTAATT
GTACCTAAGGCATATAGAAGAGCATTATAAAAACAACAACATAAATCTCAAAACTTGATC
ACTATGGGATCCTCCCTATAGTGAGTCGATNTACTCAAGGGGGNNCACCTTTGGGACCAC
TGTCGTCAAAGGCAGGGTGGACGATGGCCTACCCTTCTATCTCAATGATGGCAACCGTAG
GAGCCACCTCTCTTTGCCACTATCTTACCAATAGAGTGACAGATAACTGGGCAGTGGAAT
CCGAGGAGGTCCCCGTATATTACACCTCTGATGGAACTATAAATTGCCCTTAGGACATCT
GAGACTGTATCTGAGATATTTATGGGATACACCATCGTGGTGGACTCCACCATGTGAACA
AACATTTTCATCTTGGAATTGGAGGGAAAGAGAACCTGTAGGAACTCTCACCCCAGCTTT
ACGGCGAG
GenBank Accession AL757097 [GenBank]
Graphic View Graphic view of gene At1g04990
Predicted Position of Insertion Chr1:1421124 - go to primer design
BLAST e Value 2e-12
Hit Clone Code (BAC ID) F13M7
Hit Gene Code At1g04990 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Zinc finger C-x8-C-x5-C-x3-H type family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At4g23430

 
Sequence (A. th genome BLAST matches underlined) 
>62-K012820-022-117-F08-35St
CTATCCTTAACACGACCCTTCCTCTATATAAGGAAGTTCATTTCATTTACAGATGAGATA
TTTCCGTGAGTACCTTGACTTGTCATTGATCTTATGAAAACGAACTCCTTCTGGATACGA
GAACCGATGAGCTTCTGATGATAGGTTAACAATTGTTCCTTCTCGTAAGCTGTCACGTGA
TGTGCTCTTCATTGTATCTA
GenBank Accession CT026115 [GenBank]
Graphic View Graphic view of gene At4g23430
Predicted Position of Insertion Chr4:12230685 - go to primer design
BLAST e Value 1e-56
Hit Clone Code (BAC ID) F16G20
Hit Gene Code At4g23430 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation NAD(P)-binding Rossmann-fold superfamily protein
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 117H08


Last Updated on 10.06.2021 13:37