SimpleSearch - Line and FST details


Line specific information

 
Line ID 122E09
Vector Used pAC161
Line Availability available as T3 set from NASC (N411673)
Segregation Analysis 50:34:31
Confirmed for Hit At5g27610
Parent of DUPLO pair 12179
Parent of pair(s) none
Note

Gene hit At5g27610

 
Sequence (A. th genome BLAST matches underlined) 
>69-K028831-022-122-E09-8409
CAATCCCATACAGCTGTGAAGTTCTCTGTATATCGGCATATTCTGTGGACACCGTGGCTG
CAAGTCATTCACTGCGGAATCCATGTAGCTGAGCCACATCTGCTGGTGGGTATGAGATGA
TCCCTATCGGGGGGGGGATTACGCACCCTCCTTAAAGGGAGCCGCATAACACATCTCTGT
GGACAGGGGGGACNNNACCCATCGCTTCAANAANAGAAAAAAAAANNNNNTCGAGNNNTG
GAGGGGGAGAAGGAGAGGAGAGAGTTTTGAACGGCGCTCGAGAGGGGGAAGAGAGGAGAA
GGGAGGGGGGAAGGAAGGGGGGAAATGGGGAGAAGGGGGGTGAGGGGANAGAAAGTTGAC
GAAGGTAGGGGGAAGAATGTAGTGTGGGGAGAGGCACAAATGTTTAACTGGGGGGGAGAG
AAAGAGGTAGGAAGAAGAGAACGAAGAGAG
GenBank Accession CR934635 [GenBank]
Graphic View Graphic view of gene At5g27610
Predicted Position of Insertion Chr5:9769670 - go to primer design
BLAST e Value 2e-35
Hit Clone Code (BAC ID) F15A18
Hit Gene Code At5g27610 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation protein ALWAYS EARLY 1
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit CR770172 [GenBank] CR934634 [GenBank] CR934635 [GenBank]

Gene hit At3g49370

 
Sequence (A. th genome BLAST matches underlined) 
>69-K028242-022-122-E09-8409
TACTCTTTCTTTTTGACTATATCGAAGATCTCTTAAATTTTTAGCTAGACACTTTCTCCG
TATTCACTCCCCGCGCTTTCCGCCTGCTTTCTATATCTGTCTGGATCTGACCATCCCGAG
GATGTGGTGCTGTATGGAATCCTCCCTATACTGAGTCGTATTACTCTTTTTTTTTTTCTA
TTTTCTCTGCGGACGTGGCGGCTTTCTTTTTTTCTGGGTTGTTTTTTTTCTTTCGGGGGG
GTTCTTT
GenBank Accession CR770171 [GenBank]
Graphic View Graphic view of gene At3g49370
Predicted Position of Insertion Chr3:18307505 - go to primer design
BLAST e Value 1e-06
Hit Clone Code (BAC ID) F2K15
Hit Gene Code At3g49370 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Calcium-dependent protein kinase (CDPK) family protein
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 122E08


Last Updated on 10.06.2021 13:37