SimpleSearch - Line and FST details
Line specific information
| Line ID | 125B11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N411927) |
| Segregation Analysis | 50:44:37 |
| Confirmed for Hit | At2g47010 |
| Parent of DUPLO pair | 12339 |
| Parent of pair(s) | none |
Gene hit At2g47010
| Sequence (A. th genome BLAST matches underlined) | >82-K104603-0022-125-B11-8409 CCTTTTCTGAGACGTTTAAAGTTAGTGTTAATTACTTACTGTTTTGAGCATTCCTCTATG GGATCCTCCCTATAGTGAGGNNNNNNNNNNANNNNNANTNNATACTNNTTTATATTGANA AATTATATATATATATTTATTATTATTTTTATAATAATTATAATAATTTATATAATATAA TAATATAAATTAAAATTTTTATATATAAATAAAGAAAAATGACCACATAAGTTTCTAACA GAATCAAACAATATAAAATTACTCTTAAAAATCAAACCACACCATTAAAAATATTCATAA TAATCAATAAACTCCCAAAATAACTTAATATAAACCTTACTCTACTGAAATTTAATAAAC TAAATAAAAACTACCCACAATACATAAAATCAATATAACAAACTAAAAGAAAAGTACAAT AAAGACACAATTATAAATAATTACAAAACTATTAATAATATATCCCTAACCTATGAAACT AACAACACCACTTAATACACGAAAAATCTCAAATCTATACAGCGAACACAATAAAAACAC ATTACTCTCTTTACCCAAAACAATATATCTCATACTAACCTAATATCATTAAAAATATAA ATAATAAATAATAAAAAATTACACATTAAAAACATCATCGGCAGAATAAGATCATAGCAA AATTAAAAATAGAAAAATATAACAATAAAACTATAACAAATAAATATATATCCTAAAAAA AAATTAAACATATCATATAAAAGTCAAAAAATATTACATAATAACTAATCAAAAACAAAA AATAATTTCATATAATCAACTGAGAAAAATTTAAGATCAACATGCACTCTATTAATAAAT CCAATAAAAAATAATCATAAAATAAACTATACAAAGATTACGTGATACAAAAAACTGAAA ATAATCTACAACACAATCATGCCAATACATAATCGTTCATACATAATTACATTAGAATAG ATCATACTGCATTATACTCCTATTAAACTCACACAATACAAGAACATAACTACCATAAAT TCGTCCACATATAAGGATATGATACTGCAATGATCAATAATACCTAAATTGAAACGTCAC AATAACATACTACCCAAAAATACTTACTTAAAAGCAACCATAACAATCTCCTTTCATCTA CCAACGAACTAATTTA |
| GenBank Accession | FR803598 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:19318510 - go to primer design |
| BLAST e Value | 2e-16 |
| Hit Clone Code (BAC ID) | F14M4 |
| Hit Gene Code | At2g47010 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | calcium/calcium/calmodulin-dependent Serine/Threonine-kinase |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g01090
| Sequence (A. th genome BLAST matches underlined) | >82-K012923-022-125-B11-35St TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGAAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCAGTGGATTCGTGTTGGACATATATTCTTACTCAGCAACCACTGAGATT ACAAGAGTGTTGTTTGAGAGCGAATCAAGGTTCCTCCAAAGAAGGAAGATGACTTTAATT CTTATTTAATTTCCCTTTCTCCTTTTGCTTCACCAAAATCCACACATTCATCAATTAAAA AACAAACCCTATGGGATCCTCCCTATAGTGAGTCTTTTTAC |
| GenBank Accession | AL764389 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:32813 - go to primer design |
| BLAST e Value | 1e-81 |
| Hit Clone Code (BAC ID) | F7J8 |
| Hit Gene Code | At5g01090 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Concanavalin A-like lectin family protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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