SimpleSearch - Line and FST details
Line specific information
| Line ID | 125C08 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N411936) |
| Segregation Analysis | 50:35:33 |
| Confirmed for Hit | At4g36820 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 69583, 97605 |
Gene hit At4g36820
| Sequence (A. th genome BLAST matches underlined) | >59-K012923-022-125-C08-35St TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGCAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCTTAGTTGGACACGATATATTGGCGGTTCATACCTAACGAGAAATAGCA GACGATTATCTATAATAATCGGATATTTCCATGGGCGTGACTAGGTCCATCCTGTTCGTT CATTTGTATGAGCATGCCAACTCACATGGTCTCCCCTCTGGAGTGCTTGGGATTCCGTGC GATGATGACTTCTGCTCATCCACCCAGGCGCTTGATACCCTGTCGACGGACCATCATTCC AAAGACATCCCTTGACTCGTCTGGGTCAGCTATGGGCTCCTCCCTCTAGCGTTGCCATTA ACTCACATTCTTTGGTGAGAAGAGAGCTTTGGGCTGGTTTGGGTTACTTGACCATCCAAA CCGCAGGGTTTATGAGGCTAACGTTTTCGGACCTGACCTGCGAGGTTATGGAACC |
| GenBank Accession | FR803608 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:17347651 - go to primer design |
| BLAST e Value | 1e-44 |
| Hit Clone Code (BAC ID) | AP22 |
| Hit Gene Code | At4g36820 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | calcium uniporter (DUF607) |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g64740
| Sequence (A. th genome BLAST matches underlined) | >59-K012814-022-125-C08-8409 GCCTTACCGCGTTCTGTCTTAACCCCCTTTTATCATCATTACGCAGGCTTGCGTCTGTCT CTCTCTCTCTCTCCACCATTGACTCTCTCTCTCTCTCTCGCTCTGGAATCTTCCTTTATT TGTGTGACTGTGCGCTCTTTCACAGAAGAGAGAGAGGCCCAACCCCAAAAGAAAAGAAGG GGGTGGGGCTCGCAGCAGAATCAATACCATCTCCATATACACAATACACCTTCTCTATTC CCCCTTGTGTATTTATATTATATTTCCCCCATCAAAGTCTGTTTTTTTACACTCCGGTTC GCCTCTTTGTGTGTGTGAGAGAGAGAAAAAGAGAGCTATCTATTCTCTGATATGGGGTCT CTGGATCTCACACAATCGAGTTGAGTTAATCACAACACATTTCTCTCTTTCTCAATCGAT GTGAGAAACCCAAGATTGTTCTGTGTGTGTGTTTACACACAAATATGAACCCCGGTGGTG GGTTAATCGCCGGCTCTCACAACAAGAATGAGTGTGCCCTTATTAATGCCAGAGAAAACG CCCGAGTGTGTCTCTCCTTTTCTTTTG |
| GenBank Accession | AL764395 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:25881122 - go to primer design |
| BLAST e Value | 3e-88 |
| Hit Clone Code (BAC ID) | MVP7 |
| Hit Gene Code | At5g64740 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | cellulose synthase 6 |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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