SimpleSearch - Line and FST details
Line specific information
Line ID | 125E08 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N411960) |
Segregation Analysis | 50:49:39 |
Confirmed for Hit | At3g50850 |
Parent of DUPLO pair | 1331 |
Parent of pair(s) | none |
Gene hit At3g50850
Sequence (A. th genome BLAST matches underlined) | >61-K104603-0022-125-E08-8409 GCCATTTCTCGACTTAGCCCAACTTGAGCGTTTGCGTCGGCGTTGAATTTGAGATTCTCG ATTACGTTTGGGAGATCCGTCACCGTGACATTAGCACCTATGGGATCCTCCCTATAGTGA GTCGTATTACTCACGGGGCTATAGCGAATTGGGAGTCCTAAAATCTTGCGCCATGAACGC ATAAGCNGGTAAAGAGTACATGTGTTGAGCTACCAATTCANTGTAACCCACAGAGAAAAG AAAACCGTGGAAGGGAGGAGCTGTTGGGGGGGGAGATTAGGTGGCGAGAGATATTATGAG AGAAAGATGGGAGAAAAAGAGTGAAGTTGATATGGCAGGGGTAAGAGGAAGGATAAGTGA ATATGAAGGGAATTGGATAAGAGAAATAGAGAAGCGAGAAGAAGAGAATATGAATTGCAG AGATGAGGGAGATAGGGGATGAAGTGGAAAATAGAAATTGAAGAGGAGAAGTAAAATAAT GAAGAAAAGTTATAAAATGAGGGAGGATAAAGAGGAAATGGAACGTGAGAAGCGATATAG AAGAGAAGAAAAAAGAAGAAGATATAGTAGGAAAGTAGGAGAGAAGATTTATTAAAGGTT AGACGAAACAGAAGGGAAAGAGAGATGGGTATAGGTGAGACAAAGAAGATAAAGGGAGAA AGGAAAAATAATGAGAGGGAAGAGAAAAGAAGTAAAGATATAAAGGAATAGGAATGAAAA AGAGATGTTACGAAGAAAGAGAAAATAATGAATGAGATAGATGAAAGGGAAGATGTATAG TAGAGGAAGATATCGAAGATAGATAGATGGATAATTAAGTATTAAGTAGGAAATAGGATA TAGAGATAATAAATAAAGAATTAAAGAGAAGAGGAAAGGTGATGAAAAGAATATAATGAG AGATGGGGTATGAGTAGTAAATTTGGACGTAAGATGAGTAGTGATGAAATAAAGATATGA AATAAGTGATAAGGAGGTAAAAACATGAGTGACAGAAGATAGTAAAGAGAAGAGCGAGGG TAGAGAATATATTTGTAGAATAATAGAAAAAGAGATGAGTGATGAGCAAGTATCTGATTT TATAATGATGAGAAGAAAATGGAGGGCATATATATATGGGTGTGGTTATGGGGGTTAAGA GATAAAGGAGGGAGGATATAGGTTAAATAATTAATGTAATGA |
GenBank Accession | FR803658 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr3:18901738 - go to primer design |
BLAST e Value | 8e-37 |
Hit Clone Code (BAC ID) | F18B3 |
Hit Gene Code | At3g50850 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | Putative methyltransferase family protein |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Other FSTs Supporting this Hit | AL764418 [GenBank] FR803657 [GenBank] FR803658 [GenBank] |
Gene hit At1g22700
Sequence (A. th genome BLAST matches underlined) | >61-K012923-022-125-E08-35St TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGAAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCATGAGTCTGCATGCCTATCTTTGCATGGCACCTCACTACTACTTACCT GCTTAAAGATTCATACTTTACTATACATGTATGGGATCCTCCCTATAGCGAGTCGTGATA CTCATTACTCANNNNAANTGTNNATGTCCGCAGCGTTATTATAAAATGAAAGTACATTTT GATAAAACGACAAATTACGATCCGTCGTATTTATAGGCGAAAGCAATAAACAAATTATTC TAATTCGGAAATCTTTATTTCGACGTGTCTACATTCACGTCCAAATGGGGGCTTACACGA GAAACTTCACGATCGATGCCTTGATTTCGCCATTCCCAGATACCCATATCATCTTCAGAT TGGACTGAGATTATGCGAAAATATACCCTCGTGTACATCAAATCTGACAGCTTGAGCTAC CAATCCGGCGTCAGGCCATGACCTTACATAATGTACTCAAAAGCTA |
GenBank Accession | FR803655 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr1:8029498 - go to primer design |
BLAST e Value | 6e-09 |
Hit Clone Code (BAC ID) | T22J18 |
Hit Gene Code | At1g22700 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | Tetratricopeptide repeat (TPR)-like superfamily protein |
Insertion Classification | CDSi |
Confirmation Status | unknown |
Last Updated on 10.06.2021 13:37 |