SimpleSearch - Line and FST details
Line specific information
| Line ID | 125E08 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N411960) |
| Segregation Analysis | 50:49:39 |
| Confirmed for Hit | At3g50850 |
| Parent of DUPLO pair | 1331 |
| Parent of pair(s) | none |
Gene hit At3g50850
| Sequence (A. th genome BLAST matches underlined) | >61-K104603-0022-125-E08-8409 GCCATTTCTCGACTTAGCCCAACTTGAGCGTTTGCGTCGGCGTTGAATTTGAGATTCTCG ATTACGTTTGGGAGATCCGTCACCGTGACATTAGCACCTATGGGATCCTCCCTATAGTGA GTCGTATTACTCACGGGGCTATAGCGAATTGGGAGTCCTAAAATCTTGCGCCATGAACGC ATAAGCNGGTAAAGAGTACATGTGTTGAGCTACCAATTCANTGTAACCCACAGAGAAAAG AAAACCGTGGAAGGGAGGAGCTGTTGGGGGGGGAGATTAGGTGGCGAGAGATATTATGAG AGAAAGATGGGAGAAAAAGAGTGAAGTTGATATGGCAGGGGTAAGAGGAAGGATAAGTGA ATATGAAGGGAATTGGATAAGAGAAATAGAGAAGCGAGAAGAAGAGAATATGAATTGCAG AGATGAGGGAGATAGGGGATGAAGTGGAAAATAGAAATTGAAGAGGAGAAGTAAAATAAT GAAGAAAAGTTATAAAATGAGGGAGGATAAAGAGGAAATGGAACGTGAGAAGCGATATAG AAGAGAAGAAAAAAGAAGAAGATATAGTAGGAAAGTAGGAGAGAAGATTTATTAAAGGTT AGACGAAACAGAAGGGAAAGAGAGATGGGTATAGGTGAGACAAAGAAGATAAAGGGAGAA AGGAAAAATAATGAGAGGGAAGAGAAAAGAAGTAAAGATATAAAGGAATAGGAATGAAAA AGAGATGTTACGAAGAAAGAGAAAATAATGAATGAGATAGATGAAAGGGAAGATGTATAG TAGAGGAAGATATCGAAGATAGATAGATGGATAATTAAGTATTAAGTAGGAAATAGGATA TAGAGATAATAAATAAAGAATTAAAGAGAAGAGGAAAGGTGATGAAAAGAATATAATGAG AGATGGGGTATGAGTAGTAAATTTGGACGTAAGATGAGTAGTGATGAAATAAAGATATGA AATAAGTGATAAGGAGGTAAAAACATGAGTGACAGAAGATAGTAAAGAGAAGAGCGAGGG TAGAGAATATATTTGTAGAATAATAGAAAAAGAGATGAGTGATGAGCAAGTATCTGATTT TATAATGATGAGAAGAAAATGGAGGGCATATATATATGGGTGTGGTTATGGGGGTTAAGA GATAAAGGAGGGAGGATATAGGTTAAATAATTAATGTAATGA |
| GenBank Accession | FR803658 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:18901738 - go to primer design |
| BLAST e Value | 8e-37 |
| Hit Clone Code (BAC ID) | F18B3 |
| Hit Gene Code | At3g50850 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Putative methyltransferase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL764418 [GenBank] FR803657 [GenBank] FR803658 [GenBank] |
Gene hit At1g22700
| Sequence (A. th genome BLAST matches underlined) | >61-K012923-022-125-E08-35St TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGAAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCATGAGTCTGCATGCCTATCTTTGCATGGCACCTCACTACTACTTACCT GCTTAAAGATTCATACTTTACTATACATGTATGGGATCCTCCCTATAGCGAGTCGTGATA CTCATTACTCANNNNAANTGTNNATGTCCGCAGCGTTATTATAAAATGAAAGTACATTTT GATAAAACGACAAATTACGATCCGTCGTATTTATAGGCGAAAGCAATAAACAAATTATTC TAATTCGGAAATCTTTATTTCGACGTGTCTACATTCACGTCCAAATGGGGGCTTACACGA GAAACTTCACGATCGATGCCTTGATTTCGCCATTCCCAGATACCCATATCATCTTCAGAT TGGACTGAGATTATGCGAAAATATACCCTCGTGTACATCAAATCTGACAGCTTGAGCTAC CAATCCGGCGTCAGGCCATGACCTTACATAATGTACTCAAAAGCTA |
| GenBank Accession | FR803655 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:8029498 - go to primer design |
| BLAST e Value | 6e-09 |
| Hit Clone Code (BAC ID) | T22J18 |
| Hit Gene Code | At1g22700 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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