SimpleSearch - Line and FST details
Line specific information
| Line ID | 125E09 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N411961) |
| Segregation Analysis | 50:41:27 |
| Confirmed for Hit | At4g15770 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At4g15770
| Sequence (A. th genome BLAST matches underlined) | >69-K104604-0022-125-E09-8409 ACTACCGGCGTGAGTGTATTTCCCGATGCAGGTTCCGAAGGAGACTATGGGATCCTCCCT ATAATGAGTCGGATATCTCATAGGGGATCGGGATTTTCCTGAGACTGAGTACTATAGATC CCCGCGGATTTTATATAAAATGAAAGTAGATTTTGACAGCGCCACCAATTACTATCCGTC TTAATTATAGGCGAAAGCAATAAACAAATTATTCTAATTCGGAAATCTTTATTTCGACGT GTCTACATTCACGTCCAAATGGGGAGTCTTNATTTCAGCGTGACCGATTAAGGGTTGGAA ACGGAGAATCAAAATGGAATATAAACATAGAAAAAAAGAAAAGGGATAAACGAGAAAAGA GATTATCCGGAAGTGGATATAAAATAAGGTGTCTGAGAAGAAAAAGATGAAAAACAAGAA TAAAGTATATACATCTCGAAAGTGAAAGTAAGAGGAAGGAAGAAGAGTAAGATGAAAGTT AGAGAAATAGAAGGGAGTAAATATTAATAGATAGAGATTAAGCAATTGAGTATGACAATT AAAAAAGAGGGATGTGAGGATAAAAAGATAATAGAAGTAAACGATGTGAAGAGGTAATGA ATATAAAAAAATACATAGCTATGTGAAAGAAAGAGTGAACAATATGAAGAATTATATACT ACATAAGATAAATAAGTTTAAGAAACTTGTTAAGAATAATAAAAAGATAAGAAAAAATCT AAATTAAAGAGAGAAGAATAACTAAGCGGAGTAATAAGTTAGTAGATAATATATAAATAG GTAGAAGATTAAAAATTTGT |
| GenBank Accession | FR803662 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:8978317 - go to primer design |
| BLAST e Value | 1e-17 |
| Hit Clone Code (BAC ID) | FCAALL |
| Hit Gene Code | At4g15770 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RNA binding protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At4g04215
| Sequence (A. th genome BLAST matches underlined) | >69-K104603-0022-125-E09-8409 TACAATTCATTCTTCATGTTCTCAAATAGAGAGCAATAAGTACGACGGACAGTACCGTCA CTACTTGGCGTCATGGTAGATAGGTAGTGGATCTGCTATGGGATCCTCCCTATAGTGAG |
| GenBank Accession | FR803661 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:1141278 - go to primer design |
| BLAST e Value | 3e-39 |
| Hit Clone Code (BAC ID) | T10P11 |
| Hit Gene Code | At4g04215 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | long noncoding RNA |
| Insertion Classification | TS2TE |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | FR803660 [GenBank] |
Gene hit At3g44630
| Sequence (A. th genome BLAST matches underlined) | >69-K012814-022-125-E09-8409 TTGATCCATGTAGATTTCCCGGACTGAAGCACTTTACATTGAATTATCCGGTCTACGATA GACGAGTATTACCTTTGCGGAAGGAGCGAGACACTACTGGATCTCTTGCGTATATAGGGC ATGGATCTGACTAGGGATCCAGCATATGGGAATTCGCTTTTAGTCTTCAAAGAATGACAT TATATTTACGGCGGGACTATACCACGAATTGATCGACAAAGGAACTTCTTGCATTGTCTC TCCTTTTAACCTGATCTCTGAAATGAGCGTGGAGATCTCGGGAAAGCTTTATCGACTGCA AGCAATCTGTGGGATCAAGTGTGCGGATAGATATCAAGTTGATGTTTGTTGGAAGAGTTT CTATGGGATCCTCCCTATAGTGAGTCGTATTACTC |
| GenBank Accession | AL764419 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr3:16199671 - go to primer design |
| BLAST e Value | 3e-39 |
| Hit Clone Code (BAC ID) | T18B22 |
| Hit Gene Code | At3g44630 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Disease resistance protein (TIR-NBS-LRR class) family |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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