SimpleSearch - Line and FST details


Line specific information

 
Line ID 125E11
Vector Used pAC161
Line Availability available as T3 set from NASC (N411963)
Segregation Analysis 188:177:131
Confirmed for Hit At3g05050
Parent of DUPLO pair none
Parent of pair(s) 2933, 3004, 82945

Gene hit MJG14

 
Sequence (A. th genome BLAST matches underlined) 
>38-K020161-022-125-E11t-8409
TCATCATGGAATTTAACCCCTTATGGAGCGGCATTAAAGTCTAATCTTTTCGCGCCTACC
CAATCATATCGATATAGAGATCCGCAAATTCCCTGTACTTGCCCCTCTTCGTATAACTAA
CTCCCACCGTTGTCTTCTTCCACCTCCGCCACATCTTCTCTGTCAGAAATCGATCTTGTT
CTTTCCCCTCTCATACAATTGTTCTTCATTGACCTTATTCTAATCCACTCGTTTTTTATC
GGACTTCTTCCTCTATTTTAGCCGCGCGAGCCCATCCCACTTTCATTTTGTGGTACCACT
AATTACGTCAGATACTAAAGTATCAGAGGCTCCTCCCCTCACTATGTGCCTTCCATGATC
AATGCCCAACCATCTACATATGTTTTTCCGCGAGGTTATACCTCCCCCTTTTCACTTCTC
GenBank Accession BX530786 [GenBank]
Graphic View Graphic view of sequence BX530786 of line 125E11
Predicted Position of Insertion Chr5:14696677 - go to primer design
BLAST e Value 9e-07
Hit Clone Code (BAC ID) MJG14
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At3g05050

 
Sequence (A. th genome BLAST matches underlined) 
>85-K104602-0022-125-E11-8409
ATTCACTTCTTTTTTTGTTTAAATTCTTACATCAATGTTAGAACTGGTTCTCGGCGTTGG
CTTCAGGAGCCGGCATTGCTCTTGGGGCTCGTTCTCGGGGTCTCATTCTTCTTCCGCTCT
CTCCTTGGGCCTTGCGCGCTTCTCTTTGTCTGCAGAGGTGAATACATCACTCAAGCAACC
ATATAACAAAACAAAAAAAATTCTGACTAAAACTGATAATAAAAAAAACAAAAAAGTAAA
AAAGGAT
GenBank Accession FR803667 [GenBank]
Graphic View Graphic view of gene At3g05050
Predicted Position of Insertion Chr3:1409149 - go to primer design
BLAST e Value 4e-78
Hit Clone Code (BAC ID) T12H1
Hit Gene Code At3g05050 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Protein kinase superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit FR803668 [GenBank] FR803667 [GenBank]


Last Updated on 10.06.2021 13:37