SimpleSearch - Line and FST details
Line specific information
Line ID | 125F10 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N411974) |
Segregation Analysis | 66:42:30 |
Confirmed for Hit | At1g13040 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit At1g13040
Sequence (A. th genome BLAST matches underlined) | >78-K104602-0022-125-F10-8409 AGCCATTTCTTTGTCATCATCACCGTTGCCTCTTCTTTGTTTCAATGCGGCGACATCAGA TCGACGACGACGGCTAGGTCTTGAGCTTAAGCTATGGGATCCACCCTATAGTGAGTCTAA TCTCGCACAACCATATAGCCCAAACGGTCAGAGAACAAGAATCACCAAACTTCTATGGGA TCCTCCCC |
GenBank Accession | FR803687 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr1:4447621 - go to primer design |
BLAST e Value | 2e-30 |
Hit Clone Code (BAC ID) | F3F19 |
Hit Gene Code | At1g13040 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | Pentatricopeptide repeat (PPR-like) superfamily protein |
Insertion Classification | TS2TE (5') |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Other FSTs Supporting this Hit | AL764429 [GenBank] FR803686 [GenBank] FR803689 [GenBank] |
Gene hit At1g22700
Sequence (A. th genome BLAST matches underlined) | >78-K012923-022-125-F10-35St TGACGTAAGGGATGACGCACAATCCACTATCCTTCGAAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCAGTGTTCAGCATGTCTATCTTGTTATGGCACTTATCTTCTTCTTCCCT GCTTAGAGGATCAAACTTCTACTATACATCCATGGGATCCTGCCTATTGTGAACTCTGTA TACTGATCAGATTCCACATAATCTTCTTCTATCGTAAGAACAATTTACGAATCAAAATTC TTGATTGGGGAAAAAACAGAGGAAACCCTATGGGATCCTCCCTATAGTGAGTCATATAAC TCAATCCNACCNGTCTACTTTCACGATCAAATGGGGGCTTAGATGACACACTCGACCATC GGAGCCTTGATATCACCATTTCCACAAACCAATCCCATGATTCAGACAGGGCTGAAATCA TGCGAGAATATACACTCATATATCATAACTACTGACAGTTTGCGCTACCA |
GenBank Accession | FR803685 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr1:8029522 - go to primer design |
BLAST e Value | 6e-40 |
Hit Clone Code (BAC ID) | T22J18 |
Hit Gene Code | At1g22700 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | Tetratricopeptide repeat (TPR)-like superfamily protein |
Insertion Classification | CDSi |
Confirmation Status | unknown |
Last Updated on 10.06.2021 13:37 |