SimpleSearch - Line and FST details
Line specific information
| Line ID | 125G06 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N411982) |
| Segregation Analysis | 50:47:44 |
| Confirmed for Hit | At3g08850 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 12765 |
Gene hit At5g61310
| Sequence (A. th genome BLAST matches underlined) | >47-K104602-0022-125-G06-8409 CTGATACTACTCGGACCTTTAACATAACGTTCATCATCTCCACCACAATGTCACAAACAT ATCATACAAGCATTCTATGGGATCCTCCCTATAGTGAGTCGTATTACTCACAG |
| GenBank Accession | FR803697 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:24654391 - go to primer design |
| BLAST e Value | 1e-22 |
| Hit Clone Code (BAC ID) | MFB13 |
| Hit Gene Code | At5g61310 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Cytochrome c oxidase subunit Vc family protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | FR803699 [GenBank] |
Gene hit At3g08850
| Sequence (A. th genome BLAST matches underlined) | >47-K012923-022-125-G06-35St TGACGTAAGGGATGACGCACAATCCACTATCCTTCGAAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCAGTGTTTGATGGTCATTATCTTTCTCTTTCTTTTTACCATTTACAATT GGTAGAATAACAGAAAGAGGCATGGCATACCACCATCTTCCTCCCAAAAAATAGCTCATG GAACATCAGATATTTACCTTGTCAAGTGCAAGAATTTTTGTCCATATGAAAACCAGGATC TGTCTTAGCTCATTCGTTGTTGTATGCAGAAGCTTCAGCACATATGGGAATATTCCAACA GACAAGGCCTATGGGATCCTCCCTATAGAGAGTCGTTTTACTC |
| GenBank Accession | AL764431 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:2691314 - go to primer design |
| BLAST e Value | 7e-98 |
| Hit Clone Code (BAC ID) | T16O11 |
| Hit Gene Code | At3g08850 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Regulatory-associated protein of TOR 1 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit T5I8
| Sequence (A. th genome BLAST matches underlined) | >47-K012814-022-125-G06-8409 GATTTCCCGACTGAAGCCTTACATTGAATTTTATTGCCGGCCACAGTGGCGAGTCTGGGG CCGGACACGCACTGTGGGAGTAACTGAAGGGACTGGCCCTCGATATATGATATGAATCCA TAAGCTCAATCTTATAATTGAACCTACTAGACCTTATCTTATCGTTGATACACATACCCC TATGGACACACATATTAACACTCTTTTATGGGATCCTCCCTATGGTGAGGCGACTACTAA ATGGCAGGAGACTCCGACATTGACGGGACCTTTGGTATTAGACTGTAAATTGAAGATGTG ACGAGGGGGGCATACATACTAACACAATTGAACGGTATCCTTGGATCCTGAGTAAATGAG GAGATTACTCAATCCCTTCTATATGATAACAGAGATCTATGGGGCTCAACACAATCCTAA CACACTGAAATAAGAAATTATCTGGAGCCCATCACCGAAGACCTAACCGTATTAAGGAAA AAGTGAAATCATAAAGGGTGAACCCGCTTTACATATGAAATCTCAAAACCTTACAAAGGA CTTCAGGTTTATGGAATCATACACTA |
| GenBank Accession | FR803696 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:10875814 - go to primer design |
| BLAST e Value | 3e-14 |
| Hit Clone Code (BAC ID) | T5I8 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | FR803696 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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