SimpleSearch - Line and FST details
Line specific information
| Line ID | 125H07 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N411995) |
| Segregation Analysis | 50:41:36 |
| Confirmed for Hit | At4g33970 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 2777 |
Gene hit At4g33970
| Sequence (A. th genome BLAST matches underlined) | >56-K104601-0022-125-H07-8409 CATTTCATGGTTTGCCAAGAATATTGGCTCCATGGAATCGTTGTTCGTTCGAGAACTTTC CGATTTCAGATGGGAAGCACCCTCCGAAATCATTGTCCAGAAAGAAGATCTCGTTGAGAT TCTTCGTGTGTAGGATACACTTAGGGAT |
| GenBank Accession | FR803719 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:16280974 - go to primer design |
| BLAST e Value | 2e-21 |
| Hit Clone Code (BAC ID) | F17I5 |
| Hit Gene Code | At4g33970 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Leucine-rich repeat (LRR) family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | FR803720 [GenBank] FR803720 [GenBank] FR803719 [GenBank] |
Gene hit At5g61500
| Sequence (A. th genome BLAST matches underlined) | >56-K012814-022-125-H07-8409 TTTGATCCATGGTAGATTTCCCGGACATGAANGCCTTTACAATTGAACTTCCGATGCTCA TTGATCCATCATAATCAGTTGTTACATTCGATATACTTTCCGATTTCAGATGGGAAACAA CCTCCTAAATCATTGTCCATAAAGACAATCTCGTTGAGATTCTTCATGTTTCCGATACTC TTAGGGATACATCCGGTGAATTTATTGTTAGCAAAAGTCACAACCGAGGCCGGAGATTCC CCTATGGGATCCTCCCTATAGTGAGTCGTTTTACTGANCNGATTCAGAAACTTTGGTCAG ATTCAGACGATCACAAAAATACTCTACAAGATACATCGTAGCTTTTAAGTAGATAACAGG AAATATAAACAAGCAACAAAACAAAACCCATGAATTTTAATGAAAAGCAAAACGAAACAA GTATGAAAGAGATGCAAACCTCATCATAACCGGTCAGCCAAACACGAGGAGTTTGGTAAT ACTTATCATACCTGAACCAAAGTGAGAATNATAAGTTTGCTTACTACTGGACCANATGTA AGAAAGCTATATCTAAAAGTCAAAACGCAGTACTACACTTTTGAAGAAACCCGGGATGCT TACGTTATGCTGAGATCATATGTCCGAGTTCGGAGAATGTTATCGTCATCAGGTTCATGA GCCACAAGATAAGTTGACTGAAGAGTTGCCTGGATCAAGCATGTAAAAAGTTTAAACTAC TGGTAGAACCCAAAATTGGGAAATGGAAATTATGCCTTAAAAGCAAAATACACACACCGC CACATCATAACTGATGTGATAAACCCCAAGATATATCAATAACCCTTTACAA |
| GenBank Accession | AL764441 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:24734666 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | MCI2 |
| Hit Gene Code | At5g61500 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | autophagy 3 (APG3) |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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