SimpleSearch - Line and FST details


Line specific information

 
Line ID 129E06
Vector Used pAC161
Line Availability available as T3 set from NASC (N412342)
Segregation Analysis 50:31:28
Confirmed for Hit At2g38330
Parent of DUPLO pair 12033
Parent of pair(s) none

Gene hit MXL8

 
Sequence (A. th genome BLAST matches underlined) 
>45-K012668-022-129-E06-8409
CTCACCATGTGCACAAATGTTACGGTATACTAACGCTACAACAATATCCTTATACTGTGA
TCATGACACACGCACGGTTCTGATTCATTCTCAATTCTCAACGGCTACGATTCGAATATT
CTGAGGTGTAATGATCTATCTCATCGAGTGCAAGCATACATACTTGCTTCACAAGAACGC
TAACTACTATTTGTCTACTTATTCTTGAGCCAGAGTGGGTTTTTGAAATGATGGACTCAT
ATATGACTTAAAACAAAGAAGATATTTTCAATCTTTTTTAGCTATGGGATCCTCCCTATA
GTGAGTCTTTTACATTAAACCTTTNNCATGACCTACTTCGTTAGCAGCTCAAAAAGGACC
CACTTAAATGGCTGGGCATCAAATCGGCCTGGAAATCTGGTTGGGCTGGCTCTTTACTAA
ACGGATGCTAAACCCCTTGCTGGCACAGGTTTAATATCAATTGCCAATTCCTCTTTCGAA
ACAGAGCCATCTATACCAAGAATAACTGGGAATTTAAAAATCCCATTACCAGGATCCAAG
ATTACCTTTTGGGG
GenBank Accession AL764676 [GenBank]
Graphic View Graphic view of sequence AL764676 of line 129E06
Predicted Position of Insertion Chr3:7473079 - go to primer design
BLAST e Value 7e-123
Hit Clone Code (BAC ID) MXL8
Insertion Classification Genome Hit
Confirmation Status unknown
Other FSTs Supporting this Hit AL764676 [GenBank]

Gene hit At2g38330

 
Sequence (A. th genome BLAST matches underlined) 
>45-K012668-022-129-E06-8409
CTCACCATGTGCACAAATGTTACGGTATACTAACGCTACAACAATATCCTTATACTGTGA
TCATGACACACGCACGGTTCTGATTCATTCTCAATTCTCAACGGCTACGATTCGAATATT
CTGAGGTGTAATGATCTATCTCATCGAGTGCAAGCATACATACTTGCTTCACAAGAACGC
TAACTACTATTTGTCTACTTATTCTTGAGCCAGAGTGGGTTTTTGAAATGATGGACTCAT
ATATGACTTAAAACAAAGAAGATATTTTCAATCTTTTTTAGCTATGGGATCCTCCCTATA
GTGAGTCTTTTACATTAAACCTTTNNCATGACCTACTTCGTTAGCAGCTCAAAAAGGACC
CACTTAAATGGCTGGGCATCAAATCGGCCTGGAAATCTGGTTGGGCTGGCTCTTTACTAA
ACGGATGCTAAACCCCTTGCTGGCACAGGTTTAATATCAATTGCCAATTCCTCTTTCGAA
ACAGAGCCATCTATACCAAGAATAACTGGGAATTTAAAAATCCCATTACCAGGATCCAAG
ATTACCTTTTGGGG
GenBank Accession AL764676 [GenBank]
Graphic View Graphic view of gene At2g38330
Predicted Position of Insertion Chr2:16065752 - go to primer design
BLAST e Value 9e-27
Hit Clone Code (BAC ID) T19C21
Hit Gene Code At2g38330 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation MATE efflux family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL764677 [GenBank]


Last Updated on 10.06.2021 13:37