SimpleSearch - Line and FST details


Line specific information

 
Line ID 129G07
Vector Used pAC161
Line Availability available as T3 set from NASC (N412367)
Segregation Analysis 100:99:93
Confirmed for Hit At3g43860
Parent of DUPLO pair none
Parent of pair(s) 5623, 91139, 91200, 91229, 91235, 91250
Note

Gene hit At1g03080

 
Sequence (A. th genome BLAST matches underlined) 
>55-K012958-022-129-G07-35St
NTTGTGACGTAAGGGATGACGCTCAATCCCCTATCCTTCGCAAGACCCTTCCTCTATATA
AGGAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGC
CTTCGGTTTAAACTATCAGTGTTTATTCGACAACCCTCTGGGATCCTCCCTATAGCGAGT
CATATCACTTACTCCTTCTAAGCTCTTTCTTTTTCTTCAAATGAACATTGGCTGATCTGG
CAGAGAGTAGTTCGGCATTCGATTTCTCTATGGGATCCTCCCTATAGTGAGTCATTTTAC
TC
GenBank Accession AL764698 [GenBank]
Graphic View Graphic view of gene At1g03080
Predicted Position of Insertion Chr1:733573 - go to primer design
BLAST e Value 2e-21
Hit Clone Code (BAC ID) F10O3
Hit Gene Code At1g03080 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation kinase interacting (KIP1-like) family protein
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 106H05

Gene hit At3g43860

 
Sequence (A. th genome BLAST matches underlined) 
>55-K012668-022-129-G07-8409
NTGATCCATGTAGATTTCCCGGACATGAAGCACTTTACAATTGAATATATCCTGATGCAA
ATCTCTGGATCATCTTCTGCAAGCTTTGGGATCCTCCCTATTGTAGTTGTCTGAATGCAT
AGCTCTGACCTTACACTGCCTGCTTGGCCATCTCTATGAGGATCCTGCCCTAGTCATAGA
GTGTGGATCACCAAGGCGGAAAACGATGGAGGAAGCGGCGAATGCAGCAGCGGCTTCCGC
CGCGATCTCGGTTCCTGGAACTTTATCGCTTATCTCCAACACCGTCCTTGGTGTCTTCAT
GTTCTCAGGTCTCGCCCAGCACTGGTGGTCCGCGTTTGGATCACCAACCTATTTGATCAT
ATTCATAGGCACAACCATTTTAAGTAATAAAACGGTACGTTCATGTTTCTATGGGATCCT
CCCTATAGTGAGTCGTTTNACTC
GenBank Accession AL764697 [GenBank]
Graphic View Graphic view of gene At3g43860
Predicted Position of Insertion Chr3:15708107 - go to primer design
BLAST e Value 3e-119
Hit Clone Code (BAC ID) T28A8
Hit Gene Code At3g43860 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation glycosyl hydrolase 9A4
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37