SimpleSearch - Line and FST details
Line specific information
| Line ID | 130G06 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N412462) |
| Segregation Analysis | 50:47:42 |
| Confirmed for Hit | At1g33840 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 6884, 65331, 95615 |
Gene hit At1g33840
| Sequence (A. th genome BLAST matches underlined) | >47-K012957-022-130-G06-35St NAGTGNGACGTAAGAGGACGACGCTCAATCCCCTATCCTTCGCAAGACCCTTCCTCTATA TAAGGTATTTTCATTTCATTTGGAGAGGACAGGGCACCCGGGGATCAAATTGTCGTTTCC CGCCTTCAGTTTAAACTATCAGTGCTTACCAATTGTAAATTTGCTGATCCTTCACCTTGA ACATACAAGTTTCCTTCCGCATTCGTTATCACGAAGTTACCGTCCGTTATCGTTCAACAC CTTGCGTACGATCGCCAAATCTACAGGGTGCATATAGCAGTACTTTGGATCCACTATCAC TCCGGCTTTTGGAGGCGGCGGAGGAGCCGAGGGGCCAGTGCCTTGTGGATAACGAGACTC ATAGGGCTGCTAGATTCTTTTCTTTTTCCTCCAAATATGGATACTACTCTCTCAGGGTTC GTAATGATATGCGTTTATTTGTTTGGGGTTTGGAAAATCCCGTGGATATAAGGTCGAAAG GGTTCTTCTAATTGTATAAAAGTGAACATTCTGCCCTGGAATTTGTCTGCCTTTTAAAAA AGAGAAAAGGCCTCCGGGTGGATAAACTTATATATTTGCCCTTTTTTCTCTTTCAAACAA TTCTTAATAAGNTATTTATTCTCTTATATTTTCTTTATCCTAGAAAGGGAGAAAAAAAAA AGCCTCTTTTTGTATGGATATAAAAGAGACACCCTTTATTCTCTTGGTACTCTTGGCAAT TTGTCTCCTTGGGGAGAGTTCCTTTAATCACCTATATGGTTACAATTTTTCTAACATCTA TTTCCTCCGTGGTTTTTATAACACCCAAAACTCTTAATCCCTATTGTTGTGCAAAACACT AAAAACATATATATTTCTTTT |
| GenBank Accession | AL764766 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:12285089 - go to primer design |
| BLAST e Value | 3e-103 |
| Hit Clone Code (BAC ID) | F14M2 |
| Hit Gene Code | At1g33840 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | LURP-one-like protein (DUF567) |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit T32G9
| Sequence (A. th genome BLAST matches underlined) | >47-K012667-022-130-G06-8409 TTGATCCATGGTAGATTTCCCGGACATGAANGCCTTTACAATTGCAAGCAGCAGATTACG CGCAGAAAAAAAGGATCTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAG TGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACC TATGGGATCCTCCCTATAGTGAGTCGTATTTACTCAAGNNNNNNNANNNNNNNNNNNCCN ACNTGTTCTNGNTGNNNAACNGNNNTTGCCCGCAAAGTATAATGAAAACAGCCAGGTGGT TTGGGAAATGAAACTATTTACAAAATTAACAGCCGTGGGAACAAGAAAGTGATGTAGTGT TCGGTTGGACTAATATATGAATAAGATGACGATATTTTTGTGGGCGGTATATATAGCTGG AGAAAGTGCAAGATTTATGTGGCGAATAGCATTAGCATTAGTTAACTACTGATGAATGTA TGTGTCAAAATGGAAGAAAATAATGAGTATTTCAATTATTGATTTAACTAATTGCAGATT TCGCAGGCAAATGATAGAGTTGAAACAGGGAAAAACCCTTTACAAAAAAAGAGTTTTCAA ATGTCTTTTGGGAAACCGGCTTGGAATAAAAAAGACCACTGTTCTCTTTTTATTAATATT TCCTAAACCAAAGACCATTATTTTATGTGCGAGGGAGATGGTCTTACCTGGTTAACAAAA AAATCCCTGACTTTATTAACCTATAGGGGGGCAAAATACCCACAATCCGGAAAGCCGAAT CGAACCAA |
| GenBank Accession | FR803836 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:12851659 - go to primer design |
| BLAST e Value | 9e-73 |
| Hit Clone Code (BAC ID) | T32G9 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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