SimpleSearch - Line and FST details
Line specific information
| Line ID | 130G11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N412467) |
| Segregation Analysis | 50:49:42 |
| Confirmed for Hit | At2g13680 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At2g13680
| Sequence (A. th genome BLAST matches underlined) | >87-K012957-022-130-G11-35St TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGCAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCAGTGTTTGATGATAGTTTAAATGACCATCACCGGTGGAGATGATGAGG CATTTTTAAGGAAGGTCATTACACCAATCTACCGTGTAGTTCAAACGGTACAAGTTTGAC TGATAGGTCGATGGCATTTTAAGAATCATGATCTTGTATACATCATAGCTAACCTTTTTT ATGAACTATGGGATCCTCCCTATAGTGAGTCTTTTNACT |
| GenBank Accession | AL764770 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:5697689 - go to primer design |
| BLAST e Value | 2e-76 |
| Hit Clone Code (BAC ID) | T10F5 |
| Hit Gene Code | At2g13680 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | callose synthase 5 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At4g39780
| Sequence (A. th genome BLAST matches underlined) | >87-K012667-022-130-G11-8409 TTGATCCATGGTAGATTTCCCGGACCATGAAGCCTTTACAATTGAATATATCACGGTTGA ACTATAATCCACTTTGCATGCATGCATGAACACTACTATAGAGAATCCACCTTATTGTGA TTAAAAACAACTAAAACTACTACTATGGGATCCTCCCTATAGAGATGCGTATAACTAAAT CGTCAACAGAACAAAAGCATCTAAACAATGTAATTATTAAATTTAACATTCTACTGAAGA AATTTATATATAATTTTAAAATGATAATGATCTAAATGGGCGGCTTAACTTATGGTGTTA TATAAGCAAAGAACTTGGCCTCAAGCGAAACCAAAAGCGACAGAAAAAAACAAATATTTA GAAACAAAAAATGCTATAATTCTTCCTTTTTCTTGTTCTTTCAGAGATTTTGATTTCTAT TCAATCGACTAAGAGGGCGTGTTTTTAATCCCTCTCTGTTGTAATTTTGTTTGCTATGGG ATCCTACCTATAGCGAGACGTTTTACACTCAGCTCTGTCATCGAGCTGCTTATATAGAAT AAATAGATCAAGAATCTGGTGCTAAAGGAAACGTTTTTAATAGATGAAGATGTATAATGG AATATTGAGATAATGCTTTGGTTTTCTATCAACATTGGACAATTCTGTTTAAAGGTCTTT GGAAAAGAACCCCTTGGTATAAAGGACTAAACATTGGGAAATTCTATTATGTTGTACACA GGGGCGATGAACCGGTAATCAGAACATAACCCAAGCTCTGATTACCCACCCTACTCATCC CTA |
| GenBank Accession | AL764769 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:18459466 - go to primer design |
| BLAST e Value | 5e-142 |
| Hit Clone Code (BAC ID) | T19P19 |
| Hit Gene Code | At4g39780 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Integrase-type DNA-binding superfamily protein |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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