SimpleSearch - Line and FST details


Line specific information

 
Line ID 132G01
Vector Used pAC161
Line Availability available as T3 set from NASC (N412649)
Segregation Analysis 50:43:41
Confirmed for Hit At4g39240
Parent of DUPLO pair 12161
Parent of pair(s) none

Gene hit AP22

 
Sequence (A. th genome BLAST matches underlined) 
>07-K013051-022-132-G01-35St
TGACGTAAGGGATGACGCACAATCCACTATCCTTCGAAGACCCTTCCTCTATATAAGGAA
GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG
GTTTAAACTATTGCCTCTATATAGTCCCGTTAGCTATATAATTGAGTCAGTATACTTATT
TTGCAAGTTATAGTAGAATTTAGAGCTAATTATATATCTATATAAATGATTCAGTATTTT
GTGAACCAAATACTCCTTTGGCATTGATAAATGATAAATATTTGCGACCTTTTTCATGTC
GATAGAGTTTTTGTTTTTTTTCTTAATTCAAGCTATGGGATCCTCCCTATAGTGAGTCGT
GenBank Accession AL764921 [GenBank]
Graphic View Graphic view of sequence AL764921 of line 132G01
Predicted Position of Insertion Chr4:17439237 - go to primer design
BLAST e Value 3e-82
Hit Clone Code (BAC ID) AP22
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At4g39240

 
Sequence (A. th genome BLAST matches underlined) 
>07-K012720-022-132-G01-8409
AATTGATCCATGTAGATCTTCCCGTACTATGAAGCCAGTTTACAGATGGAATATAATCTA
TTGATTACTATGTTTGAAAGGCAGCATCTTGGACTGGCCAAGTCAACACATTCAGTATAA
GCACCATACTGATTCAAGATTACCAAGGTCTATGGCTCTGATTGTATCTACTTCCCTAGA
ACAGAGATTTGAATATCCTTTGCTGGTATACCAATATCTGCTTACCTATGGGATCCTTCG
CTGGGGAATGTCAATTGTCGCTATTGATTCTGAAATTTACGTCCTTGGTGGATGCATAAT
GAATTGGTCTCCACTGGGTTTGTCGTCGAATGTCCATCTCACACGTGTCGTCTCCTCCCT
ATGGGATCCTCCCTATAGTGAGNCG
GenBank Accession AL764920 [GenBank]
Graphic View Graphic view of gene At4g39240
Predicted Position of Insertion Chr4:18270522 - go to primer design
BLAST e Value 8e-55
Hit Clone Code (BAC ID) T22F8
Hit Gene Code At4g39240 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Galactose oxidase/kelch repeat superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37