SimpleSearch - Line and FST details


Line specific information

 
Line ID 133C11
Vector Used pAC161
Line Availability available as T3 set from NASC (N412707)
Segregation Analysis 100:62:40
Confirmed for Hit At1g71870
Parent of DUPLO pair none
Parent of pair(s) 5214, 5217, 8627

Gene hit At1g71870

 
Sequence (A. th genome BLAST matches underlined) 
>83-K012719-022-133-C11-8409
NTTTGATCCATGTAGATTNTCCCGACATGAANGCCTTTACAATTGAATATATCCTGAGAA
CATAACTATCGCATCCTCCCTATAGTGAGTCTTATTACTCAAAGNNNGGCTTCGATAACT
TTTTTAAGATTTGGTTTCATTGATTTTCTCAGGTTGGGAACGAGCTCGGTGCAGGTAGAC
CTTACAAGGCCAGACTAGCCGCGAACGTGGCTCTATGTTGCGCGTTCGTAGTAGGAGCAT
TGAATGTGGCTTGGACGGTTATTCTCACAGAGCGTTGGGCTGGACTATTCACTGGCTATG
ACCCTCTCAAGGTCTAGGTCGCTTGCGTTTAGACCATAGAAGGGCTATGCGATCTAGGGG
ATCCTCACTGTAGCGAGGGGAGCCCCCCTATAGAGAGTCGGGTTTCTTAACCGTGGCTCT
CGTTTAGTGTGCTCAATAAATACAGCATCGAAGAGGAAGAGAAAGCCGATGAAGACGAGG
TGGAGAGCTACTATGGGATCCTCCCTATAGCGAGTGGTATTACTC
GenBank Accession BX546542 [GenBank]
Graphic View Graphic view of gene At1g71870
Predicted Position of Insertion Chr1:27033098 - go to primer design
BLAST e Value 2e-95
Hit Clone Code (BAC ID) F14O23
Hit Gene Code At1g71870 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation MATE efflux family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX546543 [GenBank]


Last Updated on 10.06.2021 13:37