SimpleSearch - Line and FST details
Line specific information
| Line ID | 134B08 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N412788) |
| Segregation Analysis | 50:19:17 |
| Confirmed for Hit | At3g46420 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 72892, 72922, 72957, 72992, 73020, 73050, 73136, 73164, 73190, 73216, 73238, 73259, 73308, 73330, 73350, 73410, 73429, 73461, 73474, 73487, 73500, 73510, 73521, 73530, 73541, 73543, 73544, 73545, 73546, 73547, 73548, 73549, 73550 |
| Note |
Gene hit At3g46420
| Sequence (A. th genome BLAST matches underlined) | >58-K013053-022-134-B08-35St TTGCGTAAGGGATGACGCACAATCCCCTATCCTTCGCAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCAGTGTAAACCTACAGTGATATCCGGGAATGGCGCTATGATAATCCATA TTGCTGATCCATCATAATTCCTTGTGTCCCTGTAAGATTGTAACAGTTAGCCTATTCCAT CATGAAAATATCTCAACGTCGTTTGCGACTTTCGGAACTTCGGCTCTATGGGATCCTCCC TATAGTGAGTCTTTCAACTCAATGGGCCTTTACGAATCGAATGGAAAATTTGAAGGTTTA AACCATTTAACTACAAGAGAGACGTTGATCGTTTCTTAATTAT |
| GenBank Accession | AL765026 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:17082941 - go to primer design |
| BLAST e Value | 8e-30 |
| Hit Clone Code (BAC ID) | F18L15 |
| Hit Gene Code | At3g46420 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Leucine-rich repeat protein kinase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL765026 [GenBank] |
Gene hit At3g45555
| Sequence (A. th genome BLAST matches underlined) | >58-K104607-0022-134-B08-8409 GCCAGCGAACCTTCGGTTCCGAATGCATGAAACGATATATAGAACTGAGGCTCCTATGGC CCCCCCCCTCTAGGGGGCCCTTTAACCNCGGTGTTNTTGGGNNNCNCAAGNNNNAAGAGN NNAATTNNAATCAANNANACANNNAAAACNCCTACTCAAAAAAGTAGAGAAACANNNATT ATATGAATTTAGTNGAATTNTTATATGAGAAAATATNAAATAACAATAAAGGTAAAATAT TAGTAAAGAAAGTGAATCTAAATTATATTTTTAATAATAACTAATTAAAGGACACCGAAG AATAATAATATTATAAAATACAAAACATAAATGAAATATCCAATTGAGAGAATGAGTTAA AACATAAAATAGAACATAATAAAATATATAATTTTTATAAATGAAAGAATAGAATAGTTA TATTAGATATAAATGTATATTTCAAGATAATAAAGATCAACTGAATGAAAAAAATGATAA ATAAATATTAAATATATTAGATTAAATACAAAATAAATAATATAAATAAACCAATAAAAT GATGAATAGATAATGAAAAATATCAAGTAATATAAAATACAAAAGTGTACAGAAATAAGA ATATAAAGTATAATATTAATTTTAATATACACAAACATTAAGTTAATGCATATTATGATA ATTACACGATATTATAAAATAACATTACATATAATAAGAATAATATTAATATAAAAATGC TTTATAATTATAATAATATAAACAGATTAGAATAAATTATTAAGCAAAGATATACATAAA CATATACATAACAGTTAACTACATAACTAAAATAAATACCATATGATAAAAAAATTTATA TAATGATACTATAACAGAACTAAGATCAGACTAATAAACTATATAATTAGATTTAAAAAT ATTTATTAACATATATGTATATGATATATAAATTGATACGATTTACATTATAATTGATAA TATAAATAAACACCTATATATCTCGAAATAGACATTATAATAAATCAGTCCACAAAGAAT TTATAATGAGCGATATAGCTGAGATCATTATTAAATTATTAATACATTAATAAAATAATT AAAAATACAAGTAAGAAAGGCTAATACATTCATATATAACTCAAAAAATAAATTATGACT GATAATTTTATCATATAGATACTTCTATAATAAATTAAAAACTATAAATACATATATTTA ACTACTATTGAAATCCAAATAGAGGAATGGATGAGAGTACAAAATTAATAATAACAGATA ATTGTAGAATATAATTAGATAACATATACATAGATGATATTAAAAACGATTGTGTAAATA AAGAGATCGAAATGTATATAGGGTCTAATATAGAAGTTTATTGTAAAAAACTAATGTATA AATTTATATATATAT |
| GenBank Accession | FR803920 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:16712920 - go to primer design |
| BLAST e Value | 3e-06 |
| Hit Clone Code (BAC ID) | F9K21 |
| Hit Gene Code | At3g45555 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RING/U-box protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 146A12 |
|
Last Updated on 10.06.2021 13:37 |
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