SimpleSearch - Line and FST details
Line specific information
| Line ID | 134G01 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N412841) |
| Segregation Analysis | 50:43:37 |
| Confirmed for Hit | At5g41620 |
| Parent of DUPLO pair | 2025 |
| Parent of pair(s) | none |
| Note |
Gene hit At1g66490
| Sequence (A. th genome BLAST matches underlined) | >07-K013053-022-134-G01-35St ACTTGCGTAAGGGATGACGCACAATCCCCTATCCTTCGCAGACCCTTCCTCTATATAAGG AAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTT CGGTTTAAACTATATTAGTTTTATATAGATGTTACTGTTGCTTTTTCCCGGACATTATCA TTCTAATGAGATAACACATTCACAATCTATAAACATGAGGACAATCTCTGATCTTCCGGT GGCTTTGGTAGAAGAGATACTCTCTATGGGATCACTCCCTATAGCGAG |
| GenBank Accession | AL765082 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:24810608 - go to primer design |
| BLAST e Value | 1e-47 |
| Hit Clone Code (BAC ID) | F28G11 |
| Hit Gene Code | At1g66490 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | F-box and associated interaction domains-containing protein |
| Insertion Classification | 5' region |
| Confirmation Status | unknown |
Gene hit At3g45555
| Sequence (A. th genome BLAST matches underlined) | >07-K104608-0022-134-G01-8409 CACCTCCCTTGGCGGGCTACACGTAACTGGTAGCTCCCAGGGTATTCTCGTTTGGAATGC CTCAAACGATATATAGAATTGAGG |
| GenBank Accession | FR803983 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:16712920 - go to primer design |
| BLAST e Value | 4e-04 |
| Hit Clone Code (BAC ID) | F9K21 |
| Hit Gene Code | At3g45555 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RING/U-box protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 146A12 |
Gene hit At5g41620
| Sequence (A. th genome BLAST matches underlined) | >07-K012718-022-134-G01-8409 TTGATCCATGTAGATTTCCCGGACATTGAAGCCTTCACTTGAATCTGTTCCGTTTAACAC CTTGAGTGCACCACCGCGGGATGTAGACTGTGAAGAAGACTCTGGAGGAAGCGATTCTAA TTGCTTTGAGCTCAAGAAACCTGCAGAGTCTTATGGAGACGAAACTAAGAAACCAAACCA ACATAACAAAGACGGTTCGATTGATGAAAAGCCGAAAAGCCCGTCGAGTTTCCAAGTGAA CTTTGAGGATCAAATGGCGTGGGCGTTATCGAGTAACGGAAAGAAGAAAACCACCCGAGC TATTGAAGACGAAGAAGAAGAAGAAGATGTAAAGCCTGAGAACAGCAACAACAATAAGAA ACCAGAAAATGAGTGTGCTACTACGAACAAGAACGATGTAATGGGGGAAATGATACGAAC ACACAGAAGGTTATTGTCCGAAACTCGTGAAATCGATGAAGCGTCTTGCAATTTCCCATC TTCTCGAAGACAAGCAAGTCCAGTTCGACAATGGATTTCAAGAACCGTCGCACCTGATCT TCTATGGGATCCTCCCTA |
| GenBank Accession | AL765081 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:16648164 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | MBK23 |
| Hit Gene Code | At5g41620 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | intracellular protein transporter USO1-like protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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