SimpleSearch - Line and FST details


Line specific information

 
Line ID 136F09
Vector Used pAC161
Line Availability available as T3 set from NASC (N413029)
Segregation Analysis 50:46:33
Confirmed for Hit At5g43330
Parent of DUPLO pair none
Parent of pair(s) 2463, 92417

Gene hit K15I22

 
Sequence (A. th genome BLAST matches underlined) 
>70-K012801-022-136-F09-35St
CTGACGTAAGGGATNGACGCACAATCCACTATCCTTCGCAAGACCCTTCCTCTATATAAG
GAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCT
TCGGTTTAAACTATCAGTGTACTTTCATTTTAATTATCAGTGTACTATCAGTGTATTCGG
TTCATTTTAGTGCAGTCGTTATTTATTGTCTCTTTCTTGGGCACTATATTTTAAAGTTAG
AGGAAAATAAAAATAGTAACATATGGTCTATTTTAAAGGAAATCATGAAAGTATATTGGC
AAACAAAAAAATCATCAAATACCTTTTGCTGTTCTAAAAACTACTCCCAAAAATAAACAA
GGCGTACCTTCTTGTAATCAATAATGTGGACCTTAGATGCATCGAAACAAGGTGAAGAAG
ATAGCAAATTATTAATATTGTCATTTAATATAATTTATTAAATACCAAACTCTTCAAAAC
TGTCTGTAAATGTTCATTCAATTCACCAGCGGCAATTTTGTTTTTATGTAGAAAAAAAGG
ACCAACGTCTTAATGGAGTGTTTTTTTAAAAACTTTGGAGGCTTGGACCAAAAA
GenBank Accession AL765236 [GenBank]
Graphic View Graphic view of sequence AL765236 of line 136F09
Predicted Position of Insertion Chr5:18603231 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) K15I22
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At5g43330

 
Sequence (A. th genome BLAST matches underlined) 
>70-K012754-022-136-F09-8409
TTGATCCATGTAGATTTCCCGGACATGAAGCACTTTACAATTGAATATATCCTGATACCC
ATATACCCATATGTCAACCGCGCTACCGTTAAGACTTCCGTTGGAGAGAAGCCAGTGCGT
GAGCTATGGGATCCTCCCTATAGTGAGTCGTATATACTATTGCTTAATTTCTGCATAATG
ATCATAAGAACGATTCGAAAAGACTTATCACCTTGCAGTTTGGTGCAGCATGCTTCTCCA
AGGCAGAAGCTTGAGACTTGTAAATGGAAACGTTCTTGGACATAACATCCTTCCTCTCCA
TTCCTTCCTTCCTCGGGAAACCACCAACCATGACAGCAACATTAACACCGGTACACGCTT
CAACAGCATCAGTTGTAGCCACCACACCTTCCACAGAAAAAACACCAACATCACATTTCA
GCCTCAAGCAACATACCATATTCCAATACGAGCACAGTAAAAATATATACTATGGGATCC
TCCCTATAGTGAGTC
GenBank Accession AL765235 [GenBank]
Graphic View Graphic view of gene At5g43330
Predicted Position of Insertion Chr5:17391504 - go to primer design
BLAST e Value 1e-176
Hit Clone Code (BAC ID) MNL12
Hit Gene Code At5g43330 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Lactate/malate dehydrogenase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37