SimpleSearch - Line and FST details


Line specific information

 
Line ID 136H02
Vector Used pAC161
Line Availability available as T3 set from NASC (N413046)
Segregation Analysis 50:43:29
Confirmed for Hit At5g47430
Parent of DUPLO pair 2081
Parent of pair(s) none

Gene hit At3g06365

 
Sequence (A. th genome BLAST matches underlined) 
>16-K012801-022-136-H02-35St
TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGCAGACCCTTCCTCTATATAAGGAA
GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCAATTACCACTGTGA
AAATTGGTTTCTATGATATCCTCTTCAGCTGTGACTACAGTCAGCCGTGCTTCTACGGTG
CAATCGGCCGCGGAGGCTCCATTCGGCGGCCTCAAATCCATGACTGGATTCCCAGTTAAG
AAGGTCAACACTGACATTACTTCCATTACAAGCAATGGTGGAACAGTAAAGTGCATGGTG
ACGGTGTTCGGCATTCTGAATCTCACCGAGGACTCCTTCTTCGATGAGAGCCGGCGGCTA
TGGGATGCAGCGTACGCTGAGCCCTACTTACTATCGAGGCCTGGCTCTTGCTCCGACGGA
CGGATATACGCCGCGCGCGTAAGCGCCATCCATTTCCAGGGCTAGATGATGTGGCAAGTG
AGATGCCTCACACTCCTCAGCGGAT
GenBank Accession FR804048 [GenBank]
Graphic View Graphic view of gene At3g06365
Predicted Position of Insertion Chr3:14201479 - go to primer design
BLAST e Value 1e-16
Hit Clone Code (BAC ID) F21A14
Hit Gene Code At3g06365 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation novel transcribed region
Insertion Classification TS2TE
Confirmation Status unknown

Gene hit At5g47430

 
Sequence (A. th genome BLAST matches underlined) 
>16-K012754-022-136-H02-8409
TTGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACAATTGATAAACCCCAGTTTTA
TAGTGTTCAGAAAATTACGTTAGAAACCAATATATTTTCCCCTATGGGATCCTCCCTATA
GTGTGTCGTATTACTCACCATTTCCTTTTTATTTGTGGGCCGAATTCAATACATATTTTA
TTATAATAATTTGGGCTAACAATTGTTTTACAGAGACAAGCACCTCCACCACCAATCCAC
GATTACGATCGCCGGAGACGACCGGAGAAGAGACTATCCCCAGAGCATCCGCCTACGCGT
AAAAACATTTCCCCGTCTCGCGACTCCAAGAGAAAATCCGAGCGTTATCCTGATGAACGA
GATCGGCAACGCGACCGTGAGAGGTCACGTCACCAAGACGTAGATCGTGAACACGACCGT
ACTCGCGACCGTCGCGATGAAGACAGAAGCCGAGATCATCGCCACCACCGTGGTGAAACC
GAACGCAGCCAACATCACCACCGCAAGAGATCGGAACCGCCTTCATCGGAGCCACCAGTC
CCTGCTACTAAAGCAGAGATCGAGAATAATCTTAAGTCTATGGGATCCTCCCTATAGTGA
G
GenBank Accession AL765249 [GenBank]
Graphic View Graphic view of gene At5g47430
Predicted Position of Insertion Chr5:19236657 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) MQL5
Hit Gene Code At5g47430 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation DWNN domain, a CCHC-type zinc finger
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37