SimpleSearch - Line and FST details


Line specific information

 
Line ID 137C12
Vector Used pAC161
Line Availability available as T3 set from NASC (N413092)
Segregation Analysis 61:37:36
Confirmed for Hit At1g53910
Parent of DUPLO pair none
Parent of pair(s) 6760

Gene hit T18A20

 
Sequence (A. th genome BLAST matches underlined) 
>91-K012753-022-137-C12-8409
TTTGTCCATGTAGATTTCCCGGAATGAAGCACTTACACTTGAATATTTCCTGGCGGGAAA
TATTTACATGAGGCTAGATGGAACACTCCGTGCCTCATATGATAGGTACGAAACTAAACA
ACTATCGGAGCCATGCTATATGCATGTACAGAGTAAAGTTCCTCTAATAACCATACCAAA
ATCCTATGGGATCCTCCCTATAGTGGGTCGTTNTACTCACCCTATGGACCTATGGAGGAT
TGATGAAATTTATTACCTGATCGGAGGAGGACTCTCGAAAGATACACCTTGATGGGAATA
AGGCAGGGTGTATGTGACTATTCCGAATTACAAGCTGATCACCCGGCACAACTTNTTAAT
GAAAGTCGCTTGAATGATATCTCTGCTGTCTCTGTATGCATCTCTCAAGAGTTCCATGAC
CGCATTGCTATAAGCCATGAACCTCTATCACGAAGGCCAATGCTATGATGCTGACTAAAA
TGCCATCCAAATCGATTTAATGCAGTTTGATAAATATTTTAGTAATTCAATTATGGTTAA
CTCAGCTATGGGATCCTCCCTATAGTGAGTCGTTTAACTC
GenBank Accession CT026122 [GenBank]
Graphic View Graphic view of sequence CT026122 of line 137C12
Predicted Position of Insertion Chr1:20114071 - go to primer design
BLAST e Value 5e-28
Hit Clone Code (BAC ID) T18A20
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At1g53910

 
Sequence (A. th genome BLAST matches underlined) 
>91-K012753-022-137-C12-8409
TTTGTCCATGTAGATTTCCCGGAATGAAGCACTTACACTTGAATATTTCCTGGCGGGAAA
TATTTACATGAGGCTAGATGGAACACTCCGTGCCTCATATGATAGGTACGAAACTAAACA
ACTATCGGAGCCATGCTATATGCATGTACAGAGTAAAGTTCCTCTAATAACCATACCAAA
ATCCTATGGGATCCTCCCTATAGTGGGTCGTTNTACTCACCCTATGGACCTATGGAGGAT
TGATGAAATTTATTACCTGATCGGAGGAGGACTCTCGAAAGATACACCTTGATGGGAATA
AGGCAGGGTGTATGTGACTATTCCGAATTACAAGCTGATCACCCGGCACAACTTNTTAAT
GAAAGTCGCTTGAATGATATCTCTGCTGTCTCTGTATGCATCTCTCAAGAGTTCCATGAC
CGCATTGCTATAAGCCATGAACCTCTATCACGAAGGCCAATGCTATGATGCTGACTAAAA
TGCCATCCAAATCGATTTAATGCAGTTTGATAAATATTTTAGTAATTCAATTATGGTTAA
CTCAGCTATGGGATCCTCCCTATAGTGAGTCGTTTAACTC
GenBank Accession CT026122 [GenBank]
Graphic View Graphic view of gene At1g53910
Predicted Position of Insertion Chr1:20136363 - go to primer design
BLAST e Value 2e-08
Hit Clone Code (BAC ID) T18A20
Hit Gene Code At1g53910 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation related to AP2 12
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37