SimpleSearch - Line and FST details
Line specific information
| Line ID | 138A09 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N413161) |
| Segregation Analysis | 50:45:43 |
| Confirmed for Hit | At3g61570 |
| Parent of DUPLO pair | 12502 |
| Parent of pair(s) | none |
Gene hit At3g61570
| Sequence (A. th genome BLAST matches underlined) | >65-K012803-022-138-A09-35St NACTGACGTAAGGGATGACGCACAATCCACTATCCTTCGCAAGACCCTTCCTCTATATAA GGAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCC TTCGGTTTAAACTATCAGTGTTTGTAAGTGCTCCGTAAATATCTATGGAATGCTTCCTAT ATTGAGTGCAAATACTCATGAGATCAAACACCTGCAGATGAAGATGACTGGTCATGAAAG CCATGCTATTGGACCTGACATGGAACATCTGAAAGAAGTTAACATAGCTCTGGAGAATGA AAACAACGAGCTTAAGGATTATTGTGTCCCATACTGCTGAATGGTTGTGCAAACAAAAAT TGCCAACATTGTGTATGTCTACGCTGACTATTGGAATCTGGAACCGAATCTGATATGCTG TTTCATCACTTCATAGTTGAAACGAAGTGAGCTATAGGATCCTCCCTATAGCAGTCTTTN AACCTTACCCCANATACCCATTTCATCTTCAGATTGGTCTGAGATTATGCGAAAATATAC ACTCATATACATAAATACTGACAGTTTGAGCTACCAATTCAGTGTAGCCCATTACCTTAC ATAATTCACTCAAATGCTATGGGATCCTCCCTATAGTGAGCGNATNAC |
| GenBank Accession | FR804077 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:22781981 - go to primer design |
| BLAST e Value | 6e-114 |
| Hit Clone Code (BAC ID) | F2A19 |
| Hit Gene Code | At3g61570 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | GRIP-related ARF-binding domain-containing protein 1 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g07745
| Sequence (A. th genome BLAST matches underlined) | >65-K012752-022-138-A09-8409 TTGATCCATGGTAGATTTCCCGTACATGAANGCCTTTACAATTGAATATTTCCATGTGGA AGAGTCCTGCGTCATTATTTGTGGCAGAGGGGGTTTGCGTACGCGCAGCCCCTACCATTC TCACTCTTCAAATGTTTCTATTATTTCATTCGCTAAAATTGAGTTATTCCTTCACTTATA ATGGGCTTGCAACACAGTTCTAAAATCCTTATGGATATGTATTATGGACGAATGTATGCT ATAAAGAAAGGGCGAGTATTGATCCATGACCCATCCCTAAAAGTATTCATTTATTTTTTG TTTGGCTCTCTTAATGGGTTGGTGGAATGTGTGTATATGACATAAACACTCTTCTATTGA ATGATTTATGATGGAATTACAAAAGAAGACGCTATGGGATCCTCCCTATAGTGAATCGTA TTACTGAAA |
| GenBank Accession | AL765331 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:20996860 - go to primer design |
| BLAST e Value | 4e-149 |
| Hit Clone Code (BAC ID) | K10D11 |
| Hit Gene Code | At5g07745 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | long noncoding RNA |
| Insertion Classification | TS2TE |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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