SimpleSearch - Line and FST details
Line specific information
| Line ID | 142G07 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N413615) |
| Segregation Analysis | 50:48:39 |
| Confirmed for Hit | At5g40760 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 7929 |
Gene hit At2g33060
| Sequence (A. th genome BLAST matches underlined) | >55-K012878-022-142-G07-8409 NTGATCCATGTATATTTACCCGGACATGAACTCATTAACATTTGAATATATCCTGGACGC TTGGTAACATTCTAACTGGATTGTCTTCCGTGACCTTCTTCAGTACCAACTATATTGACT AGACCATCTTTGGCTTGAACTGATGCAATAGCCTGTGCCATTATCGGTCCAAGTGACAGA TCTGGCCAAGACCCTATAACCAGCTGCTGCCCACATGAACACTTCTGCATCTTCATGCTC TTCCTTTGGCTGTGGTGCTGGTGGCACAAAGCAGCTCCCTTGGAGAGGAAGACCACAAAG ACCTGCATTCGCCTTCAAAGGAGGATGTATATGGCCCGATGAATGGAGTCCCTTGAGGAG ATTGTGCCTATGAGTCGGTTATGGGCCACACTTATGTACGCCAAAGACGAGAGGGTCTTC AGTCCATTAGGAATAGTCCCTGAGAGTTGGTTTCTTGAGAGGACTATGGGATCCTCCCTA TAGAGAGTCTATTTAACTCANNTTATCGGAACCACAGATTGAAACACCTGAAGTTCACTA AAATAATCAGTAACGAGAGACTAATTGGCTTGAAATGCAAATGGAAATATCAACCAATCC ATGTAAACTCGCTAAGGAGATTTTTTAAGAAAAATGGTACTATGGGATCCTCCCTATAGT GAGTCGTATTACTC |
| GenBank Accession | AL765719 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:14028024 - go to primer design |
| BLAST e Value | 7e-86 |
| Hit Clone Code (BAC ID) | F25I18 |
| Hit Gene Code | At2g33060 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | receptor like protein 27 |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | BX890830 [GenBank] AL765719 [GenBank] |
Gene hit At2g33070
| Sequence (A. th genome BLAST matches underlined) | >55-K012895-022-142-G07-35St CTGACGTAAGGGGATGACGCACAATCCCACTATCCTTCGCAGACCCTTCCTCTATATAAG GAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCT TCGGTTTAAACTATCACGCATGTGTAACACACAAATTACTTACAGTTCAGCCAAAATCAT TTATTTGTTGAGAATTAGATAAACATGATGCTGAAAACAAAGATGCTTCAGGTAGAGTAA ATTTTGCCGAGATTCACAACACAATAATGACAGCTCACACAACTATGGGATCCTCCCTAT AGTGAGTCGTTATAACTCATTCCTCTTCACCTAACTTATCCAGCTTCTCCCACTTCAACG TCTCTGTATCCAACGCAAAAGTTCCACCACTCAATTGACCCGGACCTTCGTGAGCTTTTG GGTCCATCGCTATCTCACCTCCAAAGACCAAAATGTGTTTCCCAACAACCGCACTATGGG ATCCTCCCTATAGTGAGTCGTTTAACTC |
| GenBank Accession | AL765720 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr2:14029327 - go to primer design |
| BLAST e Value | 2e-83 |
| Hit Clone Code (BAC ID) | F25I18 |
| Hit Gene Code | At2g33070 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | nitrile specifier protein 2 |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | unknown |
Gene hit At5g40760
| Sequence (A. th genome BLAST matches underlined) | >55-K012878-022-142-G07-8409 NTGATCCATGTATATTTACCCGGACATGAACTCATTAACATTTGAATATATCCTGGACGC TTGGTAACATTCTAACTGGATTGTCTTCCGTGACCTTCTTCAGTACCAACTATATTGACT AGACCATCTTTGGCTTGAACTGATGCAATAGCCTGTGCCATTATCGGTCCAAGTGACAGA TCTGGCCAAGACCCTATAACCAGCTGCTGCCCACATGAACACTTCTGCATCTTCATGCTC TTCCTTTGGCTGTGGTGCTGGTGGCACAAAGCAGCTCCCTTGGAGAGGAAGACCACAAAG ACCTGCATTCGCCTTCAAAGGAGGATGTATATGGCCCGATGAATGGAGTCCCTTGAGGAG ATTGTGCCTATGAGTCGGTTATGGGCCACACTTATGTACGCCAAAGACGAGAGGGTCTTC AGTCCATTAGGAATAGTCCCTGAGAGTTGGTTTCTTGAGAGGACTATGGGATCCTCCCTA TAGAGAGTCTATTTAACTCANNTTATCGGAACCACAGATTGAAACACCTGAAGTTCACTA AAATAATCAGTAACGAGAGACTAATTGGCTTGAAATGCAAATGGAAATATCAACCAATCC ATGTAAACTCGCTAAGGAGATTTTTTAAGAAAAATGGTACTATGGGATCCTCCCTATAGT GAGTCGTATTACTC |
| GenBank Accession | AL765719 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:16313697 - go to primer design |
| BLAST e Value | 3e-60 |
| Hit Clone Code (BAC ID) | MNF13 |
| Hit Gene Code | At5g40760 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | glucose-6-phosphate dehydrogenase 6 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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