SimpleSearch - Line and FST details


Line specific information

 
Line ID 142G09
Vector Used pAC161
Line Availability available as T3 set from NASC (N413617)
Segregation Analysis 100:97:69
Confirmed for Hit At3g47550
Parent of DUPLO pair none
Parent of pair(s) 67473, 96637
Note

Gene hit At3g47550

 
Sequence (A. th genome BLAST matches underlined) 
>71-K024348-022-142-G09t-8409
CATGCATGCATGTCGACCCTATGGGATCCTCCCTATAGTGAGACTATGGGATCCTCCCTA
TAGTGAGACTTCGGACATCTCGCATAGTGAAACGTGCCATTACCTGCCATTACAGAAGTT
ATAGTGCAGGCATTTAGTATTAACTCATGGTAAGAAAACATCTTCTCACCTGAGAGCTTA
CGATGAGAGCAGCAGAGCGACAAAAGGCAGCTCCGCTTGAGTTATTCTCAAAATATTCAT
CATAGTCTGCTTCCGAGAAATGACGTTCTGCAGCCGCTATTGCCAAATTGCATGGATTAA
ACAAATATAGAAAAT
GenBank Accession BX890834 [GenBank]
Graphic View Graphic view of gene At3g47550
Predicted Position of Insertion Chr3:17524901 - go to primer design
BLAST e Value 6e-88
Hit Clone Code (BAC ID) F1P2
Hit Gene Code At3g47550 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation RING/FYVE/PHD zinc finger superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX890834 [GenBank]

Gene hit At5g38430

 
Sequence (A. th genome BLAST matches underlined) 
>71-K012895-022-142-G09-35St
TGACGTAAGGGATGACGCACATCCCACTATCCTTCGAAGACCCTTCCTCTATATAAGGAA
GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG
GTTTAAACTATCAGTGTTTGATCCATTCGGTTTAAACACTGACATTACTTCCATTACAAG
CAATGGTGGAAGAGTAAAGTGCATGGTGACGGTGTTCGGCATTCTGAATCTCACCGAGGA
CTCCTTCTTCGATGAGAGCCGGCGGCTATGGGATCCTCCCTATAGTGAGTCGTTTTACT
GenBank Accession FR804171 [GenBank]
Graphic View Graphic view of gene At5g38430
Predicted Position of Insertion Chr5:15385032 - go to primer design
BLAST e Value 6e-06
Hit Clone Code (BAC ID) MXI10
Hit Gene Code At5g38430 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Ribulose bisphosphate carboxylase (small chain) family protein
Insertion Classification CDSi
Confirmation Status failed


Last Updated on 10.06.2021 13:37