SimpleSearch - Line and FST details
Line specific information
| Line ID | 143C07 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N413663) |
| Segregation Analysis | 50:34:24 |
| Confirmed for Hit | At5g47075 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 89438, 89472, 89483 |
| Note |
Gene hit At1g16780
| Sequence (A. th genome BLAST matches underlined) | >51-K013032-022-143-C07-35St TAGTGCCGTAAGGGACGACGCTCTATCCCCTATCCGTCGCGGACCCTTCCTCTATATAGG GTATTTCGTCTCATTTGGAGAGGACAAGGCACCCGGGGATCATATTGTCGATCCCCGCCT TCAGGTAAAACTATCACTGTTAGAGGCACCAAAACCGTATCCCATACGAAGCGGTTTATA TGAGGATCCTCATTTACCTACATGTGCACACGTATCTATAAAAGAGGTCCATTTGCAACA TCTTGGGTGCATGCTGTTTTTTCTTATACCACTCGACTCGCATACGCATACTGATACTTG TGCACGCATGTTAACAGTAGACATTGCGACATCCACAATTTTTGATTGGAAGGTCATTAG GCGCCATGCTTATATTCCTGTGCAACGCACGATCTTACGCATTACTCGCTCATACTGAAC ACGAGGCCGTGAGCGCATTCACAACACAGTACATCGTTACGTCTGTCACAGTGGTAAATT GCAATGCGGTGCACTCCGTGGCGGGGGACTTTTAATTGGTNCCATCCGGGGGGCGTTTCG AACTTTATGGCACGAGACTACTAGGGGAAGGCACATCATGGTCGATGTGTCCCCATTGCC GCATTTTCAGCTTTGAGGGAAATGATAAAACCAGGACCTATGGCTATAATATACCCCATT GCAGGTGGTGAGT |
| GenBank Accession | FR804185 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:5740514 - go to primer design |
| BLAST e Value | 1e-31 |
| Hit Clone Code (BAC ID) | F17F16 |
| Hit Gene Code | At1g16780 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Inorganic H pyrophosphatase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 143D07 |
Gene hit At5g47075
| Sequence (A. th genome BLAST matches underlined) | >51-K012977-022-143-C07-8409 TTTGATCCATGTAGATTTCCCGGACATGATATTTGCAGAGGCATAATAATTTATGATCAT CTGTTTTAATACATTTGCCAATTCCTTTCCATAACTGCAAGCACAACGCGGTACACGAGC CAGCACCACAATCAGTTTCCGATAAAAACTTTTGACATATTGCGTTTTGTCCTTGAATCT CATTCACCATTGATCCTGTAAAAGTAATATTTAAAACACAAACACAAAGTTAGTTTTCAT GGTAGTAAAACTACATGATTTTATAACTGAATTAGAGATGGTTAAAAAAACCTATGGGAT CCTCCCTATAGTGAGTCGTTTTAACTTAAANACAAGCGNGNNGNGCTCCACCATGTTGAC GAAGATTTTCTTCTTGTCATTGAGTCGTAAGAGACTCTGTATGAACTGTTCGCCAGTCTT TACGGCGAGTACTGTTAGGTCCTCTATTTGAATCTTTGACTCCATGGGAATAGAGGATCC TTTATGGGATCCTCCCTATAGAGAGTCGCATGAACACGGCCGGCTGGAGATTTAGCGCAA CGCTCGCTACAGAGGGTGTATCAGAGCCTGCTGGAATTGCTGCCTGCGTCCGGCCCCTCT TTGCGAGGGTGGGAAAGAAAGGGCAAGGGTGTCAAACAAAGGAATAAAGCCAATTGTCCC CCCCAAATGACGTCGGAAAATGAAGGCCAGACGACCCATTCTCCGTGGCATTCTGGCTAA AACCAAAAAAGCAA |
| GenBank Accession | AL765768 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:19122518 - go to primer design |
| BLAST e Value | 5e-142 |
| Hit Clone Code (BAC ID) | MQD22 |
| Hit Gene Code | At5g47075 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | low-molecular-weight cysteine-rich 20 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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