SimpleSearch - Line and FST details


Line specific information

 
Line ID 144G09
Vector Used pAC161
Line Availability available as T3 set from NASC (N413809)
Segregation Analysis 50:16:16
Confirmed for Hit At1g09920 At1g74140
Parent of DUPLO pair none
Parent of pair(s) 68434, 97084

Gene hit At1g09920

 
Sequence (A. th genome BLAST matches underlined) 
>47-K101269-0022-144-G09C-8409
GCCATTTACATTGAATCCCTAGTTATACTTGTAATCACCGACACAAACCGTGGAACCAAA
CTGAATCATACAGCTCACGAGTATCTTTAATGTGACACATATTCTCAATTGCAATCACCG
ATCAATTCCAAAATTGTTATAACCTCGAGTCCAGAATATCGAATTACACAAGTCATCATC
GAACGATTACGCAACAAAGAGAAAGCAACCAATCGCCGAAAAAAACTATGATCAAATAGA
AACAAGTCAACAACCACAGACAGAGAAATCAATGGTTTTAGGGGGGAAACAAACCAGTGG
TTGCAGACGATGGTGATTTCTCCAGTCGCAGTCTCCATCGTCAAACGAGAAACAAACTTC
TATTTCGAAGCAAATAACAGATCAGAGGAGAACCAGGACGATCAGAGACCTGAAGAAACG
AAATTTCAGA
GenBank Accession HG968769 [GenBank]
Graphic View Graphic view of gene At1g09920
Predicted Position of Insertion Chr1:3226535 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F21M12
Hit Gene Code At1g09920 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation TRAF-type zinc finger-like protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL765907 [GenBank] AL765907 [GenBank]

Gene hit At1g74140

 
Sequence (A. th genome BLAST matches underlined) 
>71-K012978-022-144-G09-8409
TTGATCCATGTAGATTTCCCTGACCATGAAGCCTTTACACTTGAATCCCCATGGGACCCT
CCCTACAGCGAGATCGCCACTCTGACCCTTCTGCTGTATCGCGATCGGCGAAAGTTCATG
GGTTCTTCGCTATGGGATCCTCCCTATAGTGAGTCGTATTACTC
GenBank Accession AL765906 [GenBank]
Graphic View Graphic view of gene At1g74140
Predicted Position of Insertion Chr1:27877059 - go to primer design
BLAST e Value 3e-17
Hit Clone Code (BAC ID) F9E11
Hit Gene Code At1g74140 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Rhomboid-related intramembrane serine protease family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37