SimpleSearch - Line and FST details
Line specific information
| Line ID | 146G11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N414003) |
| Segregation Analysis | 50:47:45 |
| Confirmed for Hit | At2g40116 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 72868, 72871, 72874, 72875, 72876 |
Gene hit At2g40116
| Sequence (A. th genome BLAST matches underlined) | >87-K013035-022-146-G11-35St ACAACTGACGTAAGGGATCGACGACAATTCCACTATCCTATCGCAGACCCTTCCTGTATA TCCAGGTATGTTTTCTTAATATATAGTACTAAACTCTGGGATACTACATATAGTGATGTC GCACTATCTGATAAACTATCAGTGTTTATGTTAGGTACACAGAGGTGTGATGTTAGGCCA GGACTTTGAAAATTTGCGCAACTATCGTATAGTGGCCGACAAATTGACGCCGAGTTGACA GACTGCCTATGGGATCCTCCCTATAGTGAGTCTTTNACCTCAAGGNNNACGCAGCGGAAT TTGCTTCGGATATACCCTAAAGGGACAAGATTTAACTCCTCAAACTACAAACCTCTTATC GGTTGGACTCACGGAGCGCAAATGATTGCTTTCAACATGCAGGTAACAAGCTAAGTTTTA TAAGGTCTATGGATACCTTGACTCTTAAGCTACCTTTTGTGATGTATAAAGTGATCTCTG TATAAGAAATGAAACATTTGGTGATTATAGGGATATGGGAAATCTCTGTGGTTGATGCAC GGTATGTTTAGAGCCAATGGAGGTTGTGGATATGTCAAAAAACCTAACTTCTTGATGAAG AAAAGGTTTCACGATGAAGTCTTTGACCCTATGGGATCCTCCCTATAGTGAGC |
| GenBank Accession | AL766081 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:16753250 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F27I1 |
| Hit Gene Code | At2g40116 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Phosphoinositide-specific phospholipase C family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL766080 [GenBank] |
Gene hit At3g43060
| Sequence (A. th genome BLAST matches underlined) | >87-K104555-0022-146-G11-8409 AGCCATTTACATTGAATATAATTTTCTTCATTTCCAAAACCAGAATTCCTCCTATATCAT CAGCTAGTGGGATCCCTCCCTATAGGTGAGATCGTATTACTCA |
| GenBank Accession | FR804406 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:15065872 - go to primer design |
| BLAST e Value | 2e-06 |
| Hit Clone Code (BAC ID) | F7M19 |
| Hit Gene Code | At3g43060 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | |
| Insertion Classification | TS2TE |
| Confirmation Status | unknown |
Gene hit T30C3
| Sequence (A. th genome BLAST matches underlined) | >87-K012980-022-146-G11-8409 TTGATCCATGTAGATTCTCCCGTACATGAANGCATTTACAATTGAATATAATTTCTTCAT TTCCAAAACCAGATCCTCCTATATCATCACTATCGNATCCTCCCTATAGTGAGTCGTATT ACTCAAGGGGACNGAGCCNGNGACAGCCATCGCAGTCNCTGGAATTACAGCCGGAGGATT AATCATCATCGCACTGCTAGTGGCTTATGCCTGCTATCGTGCCCGAAAGGAAGGACCAGT CAGAGGCGACGGACGACTCACACCTATTGTAATGATGATATGATATATCACCTATTTTCG ATCTTTTTCTAATAATTTATTTTATGAAGCAACTTTTTAGATTACTATATACTATAGAAG AGCATATTGCAATTCTATTTTACCTATATAATAATAAATAATATTTCGGCGATTTTGTCA TATGCTGGAGTGTTACATTAGATGATGACTATGGGATCCTCCCTATAGTGAGTCGATTTA CTC |
| GenBank Accession | AL766079 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr4:12968950 - go to primer design |
| BLAST e Value | 6e-148 |
| Hit Clone Code (BAC ID) | T30C3 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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