SimpleSearch - Line and FST details


Line specific information

 
Line ID 146H11
Vector Used pAC161
Line Availability available as T3 set from NASC (N414015)
Segregation Analysis 100:88:67
Confirmed for Hit At1g26790
Parent of DUPLO pair 2709
Parent of pair(s) none

Gene hit T18F15

 
Sequence (A. th genome BLAST matches underlined) 
>88-K013035-022-146-H11-35St
CAACTGACGTAAGGGATGACGCACACTCCACTATCCTTCGCAGACCCTTCCTCTATATAT
GGATGTTCATTTTATGAAGGAGAGGACGGGCTACCAGAAGATGCATATAGATATGGGCTG
TTAATAGATAATGGAATGGATTACACCTTTGAAACTTAAGCTTCAAAAAAAATTAATGAT
GCCAACATTAAATAAGCCCACCAGTTATAACCCTAAAATCACTTTGGCTGGCAAAAGAGC
TTTGCATCCATCGTACGGAGATGATAGAAAATATTGCGGTGCACCACACATCTCTGGCGA
AGCTATGGGATCCTCCCTATAGTGAGATTTTNAAACTAAGTTCATGGCGACGAGTCTACA
TTCACGTCCAGATGGCGGCTTAAATGAGAAATCTTACGATCGATGCCTTGATTTCGCCAT
TTCCACGATACCCATTTCATCTTCAGATGGGACTGAGATTATGCGAAAATATACACTCAT
ATACATAAAGACTGACAGTGCGAGCTACCAATGCAGTGTAGCCCATTACCTTACATAATT
CACTCAGATGCTA
GenBank Accession AL766092 [GenBank]
Graphic View Graphic view of sequence AL766092 of line 146H11
Predicted Position of Insertion Chr1:16817673 - go to primer design
BLAST e Value 1e-68
Hit Clone Code (BAC ID) T18F15
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At1g26790

 
Sequence (A. th genome BLAST matches underlined) 
>88-K012980-022-146-H11-8409
NTGATCCATGTAGATTTCCCGGTACATATACCCGTTGCTTGTGGAACCCTTGCACTTATC
TATTAAAGTCCTACATTACATCGTATATCTATACATTCTAGGACATCTGCGCTCTGGCAA
TATTGATCCATATTGCAGCGCTGCTGCTATGGGATCCTACATATCTTGAGTCAGTTATAC
TCACTGGACGTTTCGCGAGGGAGCTCATGATCCATACTCTTCTATACGCAATGCCATAAC
AGAGACTATCCAAGAAAACCGCGGCTATGGGACTCTCCCTATAACCACACATGGTACGTA
TCATGGTCTTACCTTTATTTGTTAAGAAATGCTAAAGATTTAATATTTTCTCTATGGGAT
CCTCCCTATAGTGAGTCGTTTNACTC
GenBank Accession BX546548 [GenBank]
Graphic View Graphic view of gene At1g26790
Predicted Position of Insertion Chr1:9275174 - go to primer design
BLAST e Value 2e-27
Hit Clone Code (BAC ID) T24P13
Hit Gene Code At1g26790 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Dof-type zinc finger DNA-binding family protein
Insertion Classification TS2TE (5')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit FR804423 [GenBank]


Last Updated on 10.06.2021 13:37