SimpleSearch - Line and FST details
Line specific information
| Line ID | 151G12 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N414484) |
| Segregation Analysis | 50:19:15 |
| Confirmed for Hit | At4g11080 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 11086 |
Gene hit At3g50450
| Sequence (A. th genome BLAST matches underlined) | >95-K013133-022-151-G12-8409 NTTGATCCATGTAGATTCTCCCGGACATGAANGCCTTTACAATTGAAGAAAAAAGAAATA TCATGTGTCCAACACACAGACGCACCTATAGCGCGTGTAATACACCACCAGAAATCTCCA AAATTCAGGGAAATCGAGTTCTTTTTTAAGCGCGTGGTCGGAAATTACGGGAAACATTCC TTTTGGGCTTTTAAAAATTATTAAATGGGCCTTAGGTTGTGCTGTTATGCAACTTAATCA AGTTAGGAAGGATCAAATCTTGATACATGGTGATTGTTTTTGTCTATTAAGTGAAAACGC AAAGCAACGATCATGGATCAGGAACACTATTTTGAACGGTATGGTTCATCAAATCTTACT GTGACACAGGCTGCAAAATCCCAAATTGGGAAAGTCCCACCATTCTAAAGTAGATGTAGA CCCTTGAGGTAAACATGTGCTATTCATTGTGGAAAGTGATATTTATCTTGTTCTCATCTT CTCTATCATTGATTGTAGAAGCATCTGATGAGGACAGAAGTTGTGGTAGGACCTTGCTTC TACAATCTTTTTAAGAGGTCTTATCCCAGAATCATAAATTCATAATGATTTATGAGCAAG AANATGNTCATGTATTGTTCTTCCAATCAGCGATGGTGTCATATATGTCCTCTAGAATCA CTTTCCCCAGCTA |
| GenBank Accession | AL757718 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:18722119 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T20E23 |
| Hit Gene Code | At3g50450 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | homolog of RPW8 1 |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
Gene hit At4g11080
| Sequence (A. th genome BLAST matches underlined) | >95-K013138-022-151-G12-8409 CATCCATACTCATAATAAACACTGATGTGTCAAGAAGTGAAGTTAATAAAGGGATGTTCT TAACGTATGTGCAACAACAGATGGCGAAAAAGAACAAGGAGATATATCTGCAAGAAATGG AAGGATATAAAAGAACAAAGGAAGAAGATGCATTGAGCCACAAGAAAGAAGAAGAAGAAT TCATGAAACTCTATATACAAGAAGCTCTCCAACTTCTCAAGAAGAAGGAGAAAACCGACC ATATCATAAAGGTTAATATACTAAACTCACAGTGCATTGAGCTATTTTGGGATATAAGTC AGTAACTAACACAACACATGTTTTCTTTCTTGCAGAAGACGAAAGAGACGGCGAAGAACA AGAAAAAGAACGAGATTGTTGATCCTAACAAACCCAAAAAGCCTACTTCTTCATACTTTC TCTTCTGGTATATACTTTAAAACCCTGAATCCACAAACAATCAGATGCTAAACTGGTATT ATAATCTCAAATCTTTTTACCGCAAAGACGCAATAAAGAGTGTGTTAGAAGAACATCCTG GGATCAACAACTTACCTGTAACTGCTCACATTTTATTTGAATGGATGGGTTATTAAAAAT CATGAAACCTCAAATCCACCAATAAGATTTTTTCCCTTGTTCGTTGGAAAATTGAGTTGG TTTTGGTTACCATTTTGGTGGTAGAACTTGGCGAAAAGAGAAAACAAGTTTCAA |
| GenBank Accession | AL757719 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr4:6761704 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T22B4 |
| Hit Gene Code | At4g11080 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | HMG (high mobility group) box protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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