SimpleSearch - Line and FST details
Line specific information
| Line ID | 152F02 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N414558) |
| Segregation Analysis | 50:47:35 |
| Confirmed for Hit | At3g05160 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 96391, 96404, 96415, 96436, 96448, 96459, 96469, 96475, 96477, 96478, 96479, 96480, 96482, 96483 |
Gene hit At3g52050
| Sequence (A. th genome BLAST matches underlined) | >14-K013134-022-152-F02-8409 TTGATCCATGTAGATTCCCCGGCACATGAAGCGCTTGGATGACGAGTCTCTCACGCCGAG AGAATACTAGCGAGGATGAGGATATTGGACTGTGAATCAGATACTTACGCCGCAGATCGG GCGCACTGAATTTGAATCTTCTCACTTGAACAAACCACTGGCCTCATGAAAGAACCGAAC CTCCGATATTCATTAATCTTATGTATGGGAATCCTCCTAAAGATTGATTCGATAACTGGT TATGATTCATGGCGACTGTGTTTGCTACGCTAAGGTTAAACGCTCTTCTTCTTCATGACA ATACTTTCAGCGACGTGGATGACGCTGCTCCTGTGATATCACTCCCGTTTTCTATGGAGG AATCTCTGTCTTCCTCGGAGTGTTGGAAACTGGAGTAAACGGAACTGTGCTCTCATCTCT CCTTCCCTTGCTCGCTCTGAGAAGGTGATACTTGTACTCGTATCGACCAATTCTGAGCTA TTTAGATGTGCGCTATGACTCTTGCTATGAAGACACATGGCGATTATGGCATTGACAATT TGGAAATACCAGATTTTCTGAATCAAGGGAATGTTTCTTTCGCGACATTTCTTGTTACTA TAAACTCAGAATGGATCTTGGAGGATACTT |
| GenBank Accession | AL757800 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:19304969 - go to primer design |
| BLAST e Value | 1e-87 |
| Hit Clone Code (BAC ID) | F4F15 |
| Hit Gene Code | At3g52050 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | 5'-3' exonuclease family protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
Gene hit At3g05160
| Sequence (A. th genome BLAST matches underlined) | >14-K013139-022-152-F02-8409 TTGATCCATGTAGATTTCCCGGACATGAAGCACTTTACAATTGTAATATTATAAGTGCTA ATAGTTATCTTATATTAGTCCATATTAGGAAACAAGAGTAACCTGTAACGTGAAGCTAAC CCCAATAAGCAAGGATCCGATAGACATTCCAACAGCAGAAGCCTATGGGATCCTCCTAAT AGTGAANNNNCNCTATCANATTGGCTTANATGATACTTGTATTGAGGATATAACTCTTAT CTACAATGGTCCCCTGCTTTGTTCTATATTGGCACATATAGTTCTTTAGCTATCTGAGAT ACTTGATGGCCATGAGACTAATTAGCAGCATGATCTGATGTTCCCTGCACAAACATTCGA TATCCTCGGATCAATAACTAAACGACATTACCAACCCGAATATACGCGAGATCATACTCA CGTGTATTACTCAAACCGGACATTTGACAAACGACATCTTCTCGACATTCTGCACTCACG ACAATTAAACTTCAGNTCATAATCTCTGCAGGGACTGGGGAAAACACGAAAGCGTGTCCA CGAACCTTGGAAATGTCGTACCGGTCCCTCCGCGTACAGGGGATATGACTCTATAACCGG AGCCCTCTCGCTTTGTAGACCCCCGGCTCGCAAGTCGGGGAACCCAGAACACACTGCTAA GCGGGGGTAACTACCTCCAGGATGCACTACTATAAACCGCGTGGCAGCTCGCCGGCCGCC TTTTGTACTTGCGTTTTTTCGTGGGCAGCAACCCGTTTTCCCCCACGGCCTTTGT |
| GenBank Accession | AL757801 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:1453970 - go to primer design |
| BLAST e Value | 2e-61 |
| Hit Clone Code (BAC ID) | T12H1 |
| Hit Gene Code | At3g05160 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Major facilitator superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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